mirror of
https://github.com/Hestia-Homes/ML.git
synced 2026-06-08 11:17:25 +00:00
Compare commits
No commits in common. "master" and "model#dev#9" have entirely different histories.
master
...
model#dev#
64 changed files with 769 additions and 1743 deletions
|
|
@ -1,9 +0,0 @@
|
|||
modules/ml-pipeline/src/pipeline/data/predictions
|
||||
modules/ml-pipeline/src/pipeline/data/fit_predictions
|
||||
modules/ml-pipeline/src/pipeline/data/prepared_data
|
||||
modules/ml-pipeline/src/pipeline/data/model/allmodels
|
||||
modules/ml-pipeline/src/pipeline/metrics
|
||||
modules/ml-pipeline/src/pipeline/__pycache__
|
||||
modules/ml-pipeline/src/pipeline/.dvc
|
||||
modules/ml-pipeline/src/pipeline/analysis
|
||||
modules/ml-pipeline/src/pipeline/metrics
|
||||
127
.github/workflows/Deploy.yml
vendored
127
.github/workflows/Deploy.yml
vendored
|
|
@ -1,127 +0,0 @@
|
|||
name: Sap Change Model Deploy
|
||||
|
||||
on:
|
||||
push:
|
||||
branches: [ sap-dev, sap-prod, heat-dev, heat-prod, carbon-dev, carbon-prod]
|
||||
|
||||
jobs:
|
||||
deploy:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Checkout code
|
||||
uses: actions/checkout@v3
|
||||
|
||||
- name: Set up Python
|
||||
uses: actions/setup-python@v2
|
||||
with:
|
||||
python-version: 3.10.12
|
||||
|
||||
- name: Install Serverless and plugins
|
||||
run: |
|
||||
npm install -g serverless@^3.38.0
|
||||
npm install -g serverless-domain-manager@^7.3.8
|
||||
|
||||
- name: Install DVC
|
||||
run: |
|
||||
pip install --upgrade pip
|
||||
pip install -r modules/ml-pipeline/src/pipeline/requirements/version_control/requirements.txt
|
||||
|
||||
# Set up all of the secrets required for the deployment
|
||||
- name: set secret prefix which is used across multiple steps
|
||||
id: secret_prefix
|
||||
run: |
|
||||
# Convert branch name to uppercase and replace hyphens with underscores
|
||||
echo "::set-output name=secret_prefix::$(echo "${{ github.ref_name }}" | tr 'a-z-' 'A-Z_')"
|
||||
|
||||
- name: Set domain name
|
||||
id: set_domain
|
||||
run: echo "::set-output name=domain::${{ secrets[format('{0}_DOMAIN_NAME', steps.secret_prefix.outputs.secret_prefix)] }}"
|
||||
|
||||
- name: Set ECR credentials
|
||||
id: set_ecr_credentials
|
||||
run: |
|
||||
# Fetch the secret using the secret prefix
|
||||
echo "::set-output name=ecr_uri::${{ secrets[format('{0}_ECR_URI', steps.secret_prefix.outputs.secret_prefix)] }}"
|
||||
|
||||
- name: Set S3 buckets
|
||||
id: set_s3_buckets
|
||||
run: |
|
||||
# Fetch the secret using the secret prefix
|
||||
echo "::set-output name=data_bucket::${{ secrets[format('{0}_DATA_BUCKET', steps.secret_prefix.outputs.secret_prefix)] }}"
|
||||
echo "::set-output name=predictions_bucket::${{ secrets[format('{0}_PREDICTIONS_BUCKET', steps.secret_prefix.outputs.secret_prefix)] }}"
|
||||
|
||||
- name: Set stack_name
|
||||
id: set_stack_name
|
||||
run: |
|
||||
# Take branch prefix and add "model" for stack name
|
||||
stack_name=$( echo ${{ github.ref_name }} | awk -F"-" '{print $1}' | sed 's/$/model/g')
|
||||
if [ -z "${stack_name}" ]; then
|
||||
echo "::set-output name=stack_name::"
|
||||
else
|
||||
echo "::set-output name=stack_name::${stack_name}"
|
||||
fi
|
||||
|
||||
- name: Set runtime_environment
|
||||
id: set_runtime_environment
|
||||
run: |
|
||||
# Extract the suffix after the hyphen from the branch name
|
||||
runtime_environment=$(echo "${{ github.ref_name }}" | awk -F'-' '{print $NF}')
|
||||
echo "::set-output name=runtime_environment::$runtime_environment"
|
||||
|
||||
- name: AWS credentials for dev
|
||||
if: ${{ steps.set_runtime_environment.outputs.runtime_environment }} == 'dev'
|
||||
uses: aws-actions/configure-aws-credentials@v1
|
||||
with:
|
||||
aws-access-key-id: ${{ secrets.DEV_AWS_ACCESS_KEY_ID }}
|
||||
aws-secret-access-key: ${{ secrets.DEV_AWS_SECRET_ACCESS_KEY }}
|
||||
aws-region: eu-west-2
|
||||
|
||||
- name: AWS credentials for prod
|
||||
if: ${{ steps.set_runtime_environment.outputs.runtime_environment }} == 'prod'
|
||||
uses: aws-actions/configure-aws-credentials@v1
|
||||
with:
|
||||
aws-access-key-id: ${{ secrets.PROD_AWS_ACCESS_KEY_ID }}
|
||||
aws-secret-access-key: ${{ secrets.PROD_AWS_SECRET_ACCESS_KEY }}
|
||||
aws-region: eu-west-2
|
||||
|
||||
- name: DVC Pull
|
||||
run: |
|
||||
cd modules/ml-pipeline/src/pipeline
|
||||
dvc pull -r ${{ steps.set_runtime_environment.outputs.runtime_environment }}
|
||||
|
||||
- name: Setup Docker
|
||||
uses: docker/setup-buildx-action@v1
|
||||
|
||||
- name: Login to ECR
|
||||
run: |
|
||||
aws ecr get-login-password --region eu-west-2 | docker login --username AWS --password-stdin ${{ steps.set_ecr_credentials.outputs.ecr_uri }}
|
||||
|
||||
# Building and pushing Docker image with caching
|
||||
- name: Build and push Docker image
|
||||
uses: docker/build-push-action@v3
|
||||
with:
|
||||
context: .
|
||||
file: ./deployment/Dockerfile.prediction.lambda
|
||||
push: true
|
||||
tags: ${{ steps.set_ecr_credentials.outputs.ecr_uri }}:${{ github.sha }}
|
||||
cache-from: type=gha
|
||||
cache-to: type=gha,mode=max
|
||||
platforms: linux/amd64
|
||||
provenance: false
|
||||
build-args: |
|
||||
RUNTIME_ENVIRONMENT=${{ steps.set_runtime_environment.outputs.runtime_environment }}
|
||||
|
||||
- name: Deploy to AWS Lambda via Serverless
|
||||
env:
|
||||
RUNTIME_ENVIRONMENT: ${{ steps.set_runtime_environment.outputs.runtime_environment }}
|
||||
PREDICTIONS_BUCKET: ${{ steps.set_s3_buckets.outputs.predictions_bucket }}
|
||||
DATA_BUCKET: ${{ steps.set_s3_buckets.outputs.data_bucket }}
|
||||
DOMAIN_NAME: ${{ steps.set_domain.outputs.domain }}
|
||||
ECR_URI: ${{ steps.set_ecr_credentials.outputs.ecr_uri }}
|
||||
GITHUB_SHA: ${{ github.sha }}
|
||||
STACK_NAME: ${{ steps.set_stack_name.outputs.stack_name }}
|
||||
run: |
|
||||
# Deploy to AWS Lambda via Serverless
|
||||
cd deployment
|
||||
sls deploy --config serverless.yml --stage ${{ steps.set_runtime_environment.outputs.runtime_environment }} --verbose
|
||||
49
.github/workflows/MLPipelinePostMerge.yml
vendored
49
.github/workflows/MLPipelinePostMerge.yml
vendored
|
|
@ -10,9 +10,7 @@ on:
|
|||
types:
|
||||
- closed
|
||||
branches:
|
||||
- "sap-dev"
|
||||
- "heat-dev"
|
||||
- "carbon-dev"
|
||||
- "master"
|
||||
|
||||
permissions: write-all
|
||||
|
||||
|
|
@ -42,14 +40,7 @@ jobs:
|
|||
if [ -z "${latest_version}" ]; then
|
||||
increment_version="1.0.0"
|
||||
else
|
||||
increment_version=$(echo ${latest_version} | awk 'BEGIN {
|
||||
FS="\\." # Set the field separator to a period
|
||||
OFS="." # Set the output field separator to a period
|
||||
}
|
||||
{
|
||||
major = $1 + 1 # Increment the major version
|
||||
print major, "0", "0" # Print the new version
|
||||
}')
|
||||
increment_version=$(echo ${latest_version} | awk -F'.' '{OFS="."; $1+=1; print}')
|
||||
fi
|
||||
|
||||
new_tag=${REGISTER_MODEL_NAME}@v${increment_version}
|
||||
|
|
@ -57,7 +48,7 @@ jobs:
|
|||
git tag -a ${new_tag} -m "Registering new Major Version"
|
||||
git push origin ${new_tag}
|
||||
|
||||
gto show --json > MODEL_REGISTRY.md
|
||||
gto show > MODEL_REGISTRY.md
|
||||
git add .
|
||||
git commit -m "Update Registry"
|
||||
git push
|
||||
|
|
@ -87,14 +78,7 @@ jobs:
|
|||
if [ -z "${latest_version}" ]; then
|
||||
increment_version="0.1.0"
|
||||
else
|
||||
increment_version=$(echo ${latest_version} | awk 'BEGIN {
|
||||
FS="\\." # Set the field separator to a period
|
||||
OFS="." # Set the output field separator to a period
|
||||
}
|
||||
{
|
||||
minor = $2 + 1 # Increment the minor version
|
||||
print $1, minor, "0" # Print the new version
|
||||
}')
|
||||
increment_version=$(echo ${latest_version} | awk 'BEGIN{FS=OFS="."} {$2++; print}')
|
||||
fi
|
||||
|
||||
new_tag=${REGISTER_MODEL_NAME}@v${increment_version}
|
||||
|
|
@ -102,7 +86,7 @@ jobs:
|
|||
git tag -a ${new_tag} -m "Registering new Minor Version"
|
||||
git push origin ${new_tag}
|
||||
|
||||
gto show --json > MODEL_REGISTRY.md
|
||||
gto show > MODEL_REGISTRY.md
|
||||
git add .
|
||||
git commit -m "Update Registry"
|
||||
git push
|
||||
|
|
@ -132,14 +116,7 @@ jobs:
|
|||
if [ -z "${latest_version}" ]; then
|
||||
increment_version="0.0.1"
|
||||
else
|
||||
increment_version=$(echo ${latest_version} | awk 'BEGIN {
|
||||
FS="\\." # Set the field separator to a period
|
||||
OFS="." # Set the output field separator to a period
|
||||
}
|
||||
{
|
||||
patch = $3 + 1 # Increment the patch version
|
||||
print $1, $2, patch # Print the new version
|
||||
}')
|
||||
increment_version=$(echo ${latest_version} | awk 'BEGIN{FS=OFS="."} {$3++; print}')
|
||||
fi
|
||||
|
||||
new_tag=${REGISTER_MODEL_NAME}@v${increment_version}
|
||||
|
|
@ -147,7 +124,7 @@ jobs:
|
|||
git tag -a ${new_tag} -m "Registering new Patch Version"
|
||||
git push origin ${new_tag}
|
||||
|
||||
gto show --json > MODEL_REGISTRY.md
|
||||
gto show > MODEL_REGISTRY.md
|
||||
git add .
|
||||
git commit -m "Update Registry"
|
||||
git push
|
||||
|
|
@ -199,8 +176,6 @@ jobs:
|
|||
pip install -r modules/ml-pipeline/src/pipeline/requirements/version_control/requirements.txt
|
||||
|
||||
- name: Register Model
|
||||
env:
|
||||
TARGET_BRANCH: ${{ github.base_ref }}
|
||||
run: |
|
||||
|
||||
REGISTER_MODEL_NAME=$(echo ${{ github.event.pull_request.head.ref }} | awk -F"-" '{print $1}')
|
||||
|
|
@ -209,7 +184,7 @@ jobs:
|
|||
git config user.name "Github-Bot"
|
||||
git config user.email "Github-Bot@no-reply.com"
|
||||
|
||||
latest_dev_version=$(gto history ${REGISTER_MODEL_NAME} --asc --plain | awk '{print $NF}' | awk '/dev/' | awk 'END {print}')
|
||||
latest_dev_version=$(gto history ${REGISTER_MODEL_NAME} --asc --plain | awk '{print $NF}' | awk '/dev/')
|
||||
if [ -z "${latest_dev_version}" ]; then
|
||||
increment_version="1"
|
||||
else
|
||||
|
|
@ -217,7 +192,7 @@ jobs:
|
|||
fi
|
||||
|
||||
new_tag=${REGISTER_MODEL_NAME}#dev#${increment_version}
|
||||
latest_version=$(gto show ${REGISTER_MODEL_NAME}@latest --ref | awk -F"@" '{print $2}')
|
||||
latest_version=$(gto show model@latest --ref | awk -F"@" '{print $2}')
|
||||
|
||||
echo ${new_tag}
|
||||
|
||||
|
|
@ -228,11 +203,11 @@ jobs:
|
|||
git tag -a ${new_tag} -m "Assigning stage dev to artifact ${REGISTER_MODEL_NAME} version ${latest_version}"
|
||||
git push origin ${new_tag}
|
||||
|
||||
git checkout ${TARGET_BRANCH}
|
||||
git checkout master
|
||||
git fetch --all
|
||||
git pull
|
||||
|
||||
gto show --json > MODEL_REGISTRY.md
|
||||
gto show > MODEL_REGISTRY.md
|
||||
git add .
|
||||
git commit -m "Update Registry"
|
||||
git push origin ${TARGET_BRANCH}
|
||||
git push origin master
|
||||
|
|
|
|||
17
.github/workflows/MLPipelinePullRequest.yml
vendored
17
.github/workflows/MLPipelinePullRequest.yml
vendored
|
|
@ -5,7 +5,7 @@ on:
|
|||
# branches:
|
||||
# - "model-**"
|
||||
pull_request:
|
||||
branches: ["sap-dev", "heat-dev", "carbon-dev"]
|
||||
branches: [ "master" ]
|
||||
label:
|
||||
types: ["created", "edited"]
|
||||
|
||||
|
|
@ -89,24 +89,13 @@ jobs:
|
|||
AWS_ACCESS_KEY_ID: ${{ secrets.ROBOT_AWS_ACCESS_KEY_ID }}
|
||||
AWS_SECRET_ACCESS_KEY: ${{ secrets.ROBOT_AWS_SECRET_ACCESS_KEY }}
|
||||
REPO_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
||||
TARGET_BRANCH: ${{ github.base_ref }}
|
||||
run: |
|
||||
cd modules/ml-pipeline/src/pipeline
|
||||
echo "## Model metrics" > report.md
|
||||
|
||||
# Compare metrics to master
|
||||
git fetch --depth=1 origin ${TARGET_BRANCH}:${TARGET_BRANCH}
|
||||
dvc metrics diff --md --all ${TARGET_BRANCH} >> report.md
|
||||
|
||||
echo "## Scenario comparison" >> report.md
|
||||
|
||||
cat metrics/scenario_table.md >> report.md
|
||||
|
||||
echo "" >> report.md
|
||||
|
||||
echo "## Scenario metrics" >> report.md
|
||||
|
||||
cat metrics/scenario_metrics.md >> report.md
|
||||
git fetch --depth=1 origin master:master
|
||||
dvc metrics diff --md --all master >> report.md
|
||||
|
||||
cml comment create report.md
|
||||
|
||||
|
|
|
|||
|
|
@ -1,34 +1,9 @@
|
|||
{
|
||||
"model": {
|
||||
"version": "v12.10.12",
|
||||
"stage": {
|
||||
"dev": "v11.10.12"
|
||||
},
|
||||
"registered": true,
|
||||
"active": true
|
||||
},
|
||||
"sap": {
|
||||
"version": "v0.14.0",
|
||||
"stage": {
|
||||
"dev": "v0.14.0"
|
||||
},
|
||||
"registered": true,
|
||||
"active": true
|
||||
},
|
||||
"heat": {
|
||||
"version": "v0.5.0",
|
||||
"stage": {
|
||||
"dev": "v0.5.0"
|
||||
},
|
||||
"registered": true,
|
||||
"active": true
|
||||
},
|
||||
"carbon": {
|
||||
"version": "v0.5.0",
|
||||
"stage": {
|
||||
"dev": "v0.5.0"
|
||||
},
|
||||
"registered": true,
|
||||
"active": true
|
||||
}
|
||||
}
|
||||
╒══════════╤══════════╤════════╕
|
||||
│ name │ latest │ #dev │
|
||||
╞══════════╪══════════╪════════╡
|
||||
│ bob │ v1.0.0 │ - │
|
||||
│ makefile │ v0.1.0 │ v0.1.0 │
|
||||
│ model │ v9.7.9 │ v9.7.9 │
|
||||
│ readme │ v0.0.1 │ v0.0.1 │
|
||||
│ temp │ v0.0.1 │ v0.0.1 │
|
||||
╘══════════╧══════════╧════════╛
|
||||
|
|
|
|||
74
README.md
74
README.md
|
|
@ -3,83 +3,21 @@
|
|||
Creating a ML-toolkit that can be reused:
|
||||
|
||||
- ML pipeline:
|
||||
- A generic pipeline that has data version control, experiment
|
||||
- A generic pipeline that has data version control, experiment
|
||||
tracking and a model registry
|
||||
|
||||
- ML monitoring:
|
||||
- A bolt-on service that can implement model monitoring
|
||||
|
||||
There are multiple protected branches which adapt the generic pipeline to produce different models:
|
||||
- sap-{dev/staging/prod}-**
|
||||
- heat-{dev/staging/prod}-**
|
||||
- carbon-{dev/staging/prod}-**
|
||||
- sap_change-**
|
||||
- heat_change-**
|
||||
- carbon_change-**
|
||||
|
||||
These branches will differ by the configuration files that define the data used and the outputs of the ML-pipeline
|
||||
- There can be different additional logic for each branch but the pipeline will be the same.
|
||||
|
||||
# Deployment
|
||||
# Deployment
|
||||
|
||||
Scripts associated to deployment can be found in the deployment/ folder.
|
||||
TBD
|
||||
|
||||
Deployment is automated via Github Actions, where a deployment is triggered by a push to one of the
|
||||
protected branch, with one of dev or prod as the suffix, describing the target environment.
|
||||
|
||||
The github actions file will build and push a docker image to ECR and then deploy a lambda
|
||||
which produces predictions for the relevant model.
|
||||
|
||||
In order for this to be set up, some key environment variables needs to be inserted into Github
|
||||
secrets. Each different model and protected branch has its own set of secrets which allows for flexibility
|
||||
between different pipelines.
|
||||
|
||||
For example, for the branch sap-dev, the prefix=SAP_DEV, and the following secrets are:
|
||||
|
||||
- {prefix}_ECR_URI, which is the URI of the ECR repository to push to. For example, for the
|
||||
sap change model this is the lambda-sap-prediction-dev repository.
|
||||
- {prefix}_DOMAIN_NAME, is the custom domain name. This is likely going to be the same across the different
|
||||
models, but is still included in the secrets for flexibility.
|
||||
- {prefix}_DATA_BUCKET, is the name of the s3 data bucket where data to be scored by the model is stored
|
||||
- {prefix}_MODEL_BUCKET, is the name of the s3 bucket where the model is stored
|
||||
- {prefix}_PREDICTIONS_BUCKET, is the name of the s3 bucket where the predictions are stored
|
||||
|
||||
|
||||
# Building and Testing the Prediction Lambda Function Locally
|
||||
TODO: Generalise these instructions for the various different pipelines
|
||||
|
||||
This guide outlines the steps to build and test the Lambda function locally using Docker. These instructions assume you're working with a machine that has Docker installed.
|
||||
|
||||
### Prerequisites
|
||||
Docker: Make sure Docker is installed and running on your machine.
|
||||
AWS Credentials: Ensure you have AWS credentials set up on your local machine, typically stored
|
||||
in ~/.aws/credentials.
|
||||
Root Directory: All commands should be run from the root directory of the repository.
|
||||
Step-by-Step Guide
|
||||
1. Building the Docker Image
|
||||
First, navigate to the root directory of the repository. Open a terminal and execute the following
|
||||
2. command to build the Docker image:
|
||||
|
||||
```bash
|
||||
docker build -t sap -f deployment/Dockerfile.prediction.lambda .
|
||||
```
|
||||
|
||||
This will build a Docker image tagged as sap_change using the Dockerfile.prediction.lambda located
|
||||
in the deployment directory.
|
||||
|
||||
2. Running the Docker Image
|
||||
Once the image is built, you can run it using the following command:
|
||||
|
||||
```bash
|
||||
docker run -p 9000:8080 -v ~/.aws/credentials:/root/.aws/credentials:ro -e RUNTIME_ENVIRONMENT=dev -e PREDICTIONS_BUCKET=retrofit-sap-predictions-dev sap
|
||||
```
|
||||
This command does the following:
|
||||
|
||||
Maps port 9000 on your local machine to port 8080 on the Docker container.
|
||||
Mounts your AWS credentials into the Docker container in read-only mode.
|
||||
Sets the RUNTIME_ENVIRONMENT variable to dev.
|
||||
3. Testing the Lambda Function
|
||||
To test the Lambda function, use the following curl command:
|
||||
|
||||
```json
|
||||
curl -XPOST "http://localhost:9000/2015-03-31/functions/function/invocations" -d '{"body": "{\"file_location\": \"s3://retrofit-data-dev/sap_change_model/one_sample_test_dataset.parquet\", \"property_id\": 1, \"portfolio_id\": 4, \"created_at\": \"now\"}"}'
|
||||
```
|
||||
|
||||
This will send a POST request to the running Lambda function and pass in the required data as JSON.
|
||||
|
|
|
|||
|
|
@ -1,9 +0,0 @@
|
|||
modules/ml-pipeline/src/pipeline/data/predictions
|
||||
modules/ml-pipeline/src/pipeline/data/fit_predictions
|
||||
modules/ml-pipeline/src/pipeline/data/prepared_data
|
||||
modules/ml-pipeline/src/pipeline/data/model/allmodels
|
||||
modules/ml-pipeline/src/pipeline/metrics
|
||||
modules/ml-pipeline/src/__pycache__
|
||||
modules/ml-pipeline/src/.dvc
|
||||
modules/ml-pipeline/src/analysis
|
||||
modules/ml-pipeline/src/metrics
|
||||
|
|
@ -1,25 +0,0 @@
|
|||
FROM public.ecr.aws/lambda/python:3.10
|
||||
|
||||
# Set the working directory
|
||||
WORKDIR ${LAMBDA_TASK_ROOT}
|
||||
ENV PYTHONPATH "${PYTHONPATH}:${LAMBDA_TASK_ROOT}"
|
||||
|
||||
# Environment variables
|
||||
ARG RUNTIME_ENVIRONMENT
|
||||
ENV RUNTIME_ENVIRONMENT=${RUNTIME_ENVIRONMENT}
|
||||
|
||||
# Install necessary build tools - required to test locally
|
||||
RUN yum install -y gcc python3-devel gcc-c++
|
||||
|
||||
# Install python packages
|
||||
COPY modules/ml-pipeline/src/pipeline/requirements/predictions/requirements.txt ./requirements.txt
|
||||
RUN pip install --no-cache-dir -r ./requirements.txt
|
||||
|
||||
# Copy the project code
|
||||
COPY modules/ml-pipeline/src/pipeline ./pipeline
|
||||
# Copy the handler
|
||||
COPY deployment/handlers/prediction_app.py ./pipeline/prediction_app.py
|
||||
WORKDIR ${LAMBDA_TASK_ROOT}/pipeline
|
||||
|
||||
|
||||
CMD [ "prediction_app.handler" ]
|
||||
|
|
@ -1,123 +0,0 @@
|
|||
"""
|
||||
This script is the handler for the lambda prediction function, responsible
|
||||
for producting predictions for a model
|
||||
"""
|
||||
|
||||
import boto3
|
||||
from botocore.exceptions import NoCredentialsError
|
||||
import json
|
||||
from io import StringIO
|
||||
import os
|
||||
import logging
|
||||
from generate_predictions import generate_predictions
|
||||
from core.MLModels import model_factory
|
||||
from config import settings
|
||||
from core.DataClient import dataclient_factory
|
||||
|
||||
logger = logging.getLogger()
|
||||
logger.setLevel(logging.INFO)
|
||||
|
||||
PREDICTIONS_BUCKET = os.getenv("PREDICTIONS_BUCKET", None)
|
||||
|
||||
|
||||
def upload_dataframe_to_s3(df, bucket, s3_file_name):
|
||||
"""
|
||||
Upload a pandas DataFrame to an S3 bucket as CSV
|
||||
|
||||
:param df: DataFrame to upload
|
||||
:param bucket: Bucket to upload to
|
||||
:param s3_file_name: S3 object name
|
||||
:return: True if file was uploaded, else False
|
||||
"""
|
||||
|
||||
# Initialize the S3 client
|
||||
s3 = boto3.client("s3")
|
||||
csv_buffer = StringIO()
|
||||
|
||||
# Write the DataFrame to the buffer as CSV
|
||||
df.to_csv(csv_buffer, index=False)
|
||||
|
||||
try:
|
||||
# Upload the CSV from the buffer to S3
|
||||
s3.put_object(Bucket=bucket, Key=s3_file_name, Body=csv_buffer.getvalue())
|
||||
print(f"Successfully uploaded DataFrame to {bucket}/{s3_file_name}")
|
||||
return True
|
||||
except NoCredentialsError:
|
||||
print("Credentials not available")
|
||||
return False
|
||||
|
||||
|
||||
def handler(event, context):
|
||||
"""
|
||||
Take in event and trigger the prediction pipeline
|
||||
"""
|
||||
|
||||
logger.info("received event: " + str(event))
|
||||
|
||||
try:
|
||||
body = (
|
||||
json.loads(event["body"])
|
||||
if not isinstance(event["body"], dict)
|
||||
else event["body"]
|
||||
)
|
||||
|
||||
property_id = body["property_id"]
|
||||
portfolio_id = body["portfolio_id"]
|
||||
created_at = body["created_at"]
|
||||
|
||||
# TODO: Implement the loading of the model and prediction
|
||||
|
||||
storage_filepath = f"s3://{PREDICTIONS_BUCKET}/{portfolio_id}/{property_id}/{created_at}.parquet"
|
||||
|
||||
logger.info(f"--- Initiate MLModel ---")
|
||||
|
||||
build_model_params = settings.build_model
|
||||
client_params = settings.client
|
||||
feature_process_params = settings.feature_processor
|
||||
generate_predictions_params = settings.generate_predictions
|
||||
|
||||
model = model_factory(build_model_params["model_type"])
|
||||
|
||||
logger.info(f"--- Initiate Input DataClient ---")
|
||||
input_dataclient = dataclient_factory(
|
||||
dataclient_type="aws-s3",
|
||||
dataclient_config=client_params["aws-s3"],
|
||||
)
|
||||
|
||||
logger.info(f"--- Initiate Output DataClient ---")
|
||||
output_dataclient = dataclient_factory(
|
||||
dataclient_type="aws-s3",
|
||||
dataclient_config=client_params["aws-s3"],
|
||||
)
|
||||
|
||||
generate_predictions(
|
||||
input_dataclient=input_dataclient,
|
||||
output_dataclient=output_dataclient,
|
||||
model=model,
|
||||
target=feature_process_params["feature_processor_config"]["target"],
|
||||
model_filepath=build_model_params["model_save_filepath"],
|
||||
test_data_filepath=body["file_location"],
|
||||
predictions_output_filepath=storage_filepath,
|
||||
predictions_column_name=generate_predictions_params[
|
||||
"predictions_column_name"
|
||||
],
|
||||
identifier_column=generate_predictions_params["identifier_column"],
|
||||
)
|
||||
|
||||
return {
|
||||
"statusCode": 200,
|
||||
"body": json.dumps(
|
||||
{
|
||||
"message": "Successfully processed input",
|
||||
"storage_filepath": storage_filepath,
|
||||
}
|
||||
),
|
||||
}
|
||||
|
||||
except (Exception, KeyError, ValueError) as e:
|
||||
logger.info("Prediction failed")
|
||||
logger.info(e)
|
||||
return {
|
||||
"statusCode": 500,
|
||||
"body": json.dumps({"message": "Prediction failed", "error": str(e)}),
|
||||
}
|
||||
|
|
@ -1,53 +0,0 @@
|
|||
service: ${env:STACK_NAME}
|
||||
|
||||
provider:
|
||||
name: aws
|
||||
region: eu-west-2
|
||||
architecture: x86_64
|
||||
environment:
|
||||
RUNTIME_ENVIRONMENT: ${env:RUNTIME_ENVIRONMENT}
|
||||
PREDICTIONS_BUCKET: ${env:PREDICTIONS_BUCKET}
|
||||
DATA_BUCKET: ${env:DATA_BUCKET}
|
||||
DOMAIN_NAME: ${env:DOMAIN_NAME}
|
||||
ECR_URI: ${env:ECR_URI}
|
||||
GITHUB_SHA: ${env:GITHUB_SHA}
|
||||
iam:
|
||||
role:
|
||||
name: ${env:STACK_NAME}_s3_access
|
||||
statements:
|
||||
# Allow reading from the DATA_BUCKET
|
||||
- Effect: Allow
|
||||
Action:
|
||||
- s3:*
|
||||
Resource:
|
||||
- arn:aws:s3:::${env:DATA_BUCKET}
|
||||
- arn:aws:s3:::${env:DATA_BUCKET}/*
|
||||
# Allow reading and writing to PREDICTIONS_BUCKET
|
||||
- Effect: Allow
|
||||
Action:
|
||||
- s3:*
|
||||
Resource:
|
||||
- arn:aws:s3:::${env:PREDICTIONS_BUCKET}
|
||||
- arn:aws:s3:::${env:PREDICTIONS_BUCKET}/*
|
||||
|
||||
|
||||
|
||||
plugins:
|
||||
- serverless-domain-manager
|
||||
|
||||
custom:
|
||||
customDomain:
|
||||
domainName: api.${self:provider.environment.DOMAIN_NAME}
|
||||
basePath: ${env:STACK_NAME}
|
||||
createRoute53Record: true
|
||||
certificateArn: ${ssm:/ssl_certificate_arn}
|
||||
|
||||
functions:
|
||||
sap_prediction_lambda:
|
||||
image:
|
||||
uri: ${env:ECR_URI}:${env:GITHUB_SHA}
|
||||
events:
|
||||
- http:
|
||||
path: /predict
|
||||
method: POST
|
||||
timeout: 120 # Set max run time to 2 minutes - we shouldn't need this much time so this can be reviewed
|
||||
3
modules/ml-pipeline/.dvc/.gitignore
vendored
Normal file
3
modules/ml-pipeline/.dvc/.gitignore
vendored
Normal file
|
|
@ -0,0 +1,3 @@
|
|||
/config.local
|
||||
/tmp
|
||||
/cache
|
||||
2
modules/ml-pipeline/.dvc/config
Normal file
2
modules/ml-pipeline/.dvc/config
Normal file
|
|
@ -0,0 +1,2 @@
|
|||
['remote "myremote"']
|
||||
url = /tmp/dvcstore
|
||||
3
modules/ml-pipeline/.dvcignore
Normal file
3
modules/ml-pipeline/.dvcignore
Normal file
|
|
@ -0,0 +1,3 @@
|
|||
# Add patterns of files dvc should ignore, which could improve
|
||||
# the performance. Learn more at
|
||||
# https://dvc.org/doc/user-guide/dvcignore
|
||||
1
modules/ml-pipeline/.gitignore
vendored
1
modules/ml-pipeline/.gitignore
vendored
|
|
@ -3,4 +3,3 @@
|
|||
__pycache__/
|
||||
.DS_Store
|
||||
.vscode/
|
||||
data/
|
||||
|
|
|
|||
2
modules/ml-pipeline/.gto
Normal file
2
modules/ml-pipeline/.gto
Normal file
|
|
@ -0,0 +1,2 @@
|
|||
# .gto config file
|
||||
stages: [dev, stage, prod] # list of allowed Stages
|
||||
|
|
@ -9,16 +9,16 @@ init: dev-conda
|
|||
.PHONY: dev-conda
|
||||
dev-conda:
|
||||
# conda deactivate || echo "Not in conda environment"
|
||||
# conda remove --name ${CONDA_ENV} --all -y || echo "No environment created previously"
|
||||
conda create --name ${CONDA_ENV} python=$(PYTHON_VERSION) -y
|
||||
# conda remove --name $CONDA_ENV --all -y || echo "No environment created previously"
|
||||
conda create --name $CONDA_ENV python=$(PYTHON_VERSION) -y
|
||||
conda init bash
|
||||
conda run -v -n ${CONDA_ENV} pip install --upgrade pip
|
||||
conda run -v -n ${CONDA_ENV} pip install -r src/pipeline/requirements/training/requirements-dev.txt
|
||||
conda run -v -n ${CONDA_ENV} pip install -r src/pipeline/requirements/version_control/requirements.txt
|
||||
conda run -v -n ${CONDA_ENV} pre-commit install
|
||||
conda run -v -n ${CONDA_ENV} pip install ipykernel
|
||||
conda run -vvvv -n $CONDA_ENV pip install --upgrade pip
|
||||
conda run -vvvv -n $CONDA_ENV pip install -r src/pipeline/requirements/training/requirements-dev.txt
|
||||
conda run -vvvv -n $CONDA_ENV pip install -r src/pipeline/requirements/version_control/requirements.txt
|
||||
conda run -vvvv -n $CONDA_ENV pre-commit install
|
||||
conda run -vvvv -n $CONDA_ENV pip install ipykernel
|
||||
echo "TO ACTIVATE ENVIRONMENT, USE THE FOLLOWING COMMAND"
|
||||
echo "conda activate ${CONDA_ENV}"
|
||||
echo "conda activate $CONDA_ENV"
|
||||
|
||||
|
||||
.PHONY: dev-pyenv
|
||||
|
|
|
|||
|
|
@ -1,8 +0,0 @@
|
|||
pipeline/data/predictions
|
||||
pipeline/data/fit_predictions
|
||||
pipeline/data/prepared_data/train.parquet
|
||||
pipeline/data/fit_predictions
|
||||
pipeline/data/model/allmodels
|
||||
pipeline/metrics
|
||||
pipeline/.dvc
|
||||
pipeline/analysis
|
||||
|
|
@ -1,7 +1,7 @@
|
|||
# Dockerfile that can be used to test loading a model to generate a prediction (part of CI/CD flow)
|
||||
FROM python:3.10.12-slim
|
||||
|
||||
RUN apt-get update && apt-get install -y libgomp1 gcc python3-dev
|
||||
RUN apt-get update && apt-get install -y libgomp1
|
||||
|
||||
COPY pipeline/requirements/predictions/requirements.txt requirements.txt
|
||||
|
||||
|
|
@ -13,4 +13,4 @@ COPY pipeline/ /home/pipeline/
|
|||
|
||||
WORKDIR /home/pipeline/
|
||||
|
||||
CMD [ "python", "3_generate_predictions.py"]
|
||||
CMD [ "python", "generate_predictions.py"]
|
||||
|
|
|
|||
|
|
@ -1,3 +1,3 @@
|
|||
# The generic reproducible ML-pipeline
|
||||
|
||||
Pipeline required to build a model to produce an output, that gets hashed via DVC
|
||||
Pipeline required to build a model to produce an output
|
||||
|
|
|
|||
3
modules/ml-pipeline/src/pipeline/.gitignore
vendored
3
modules/ml-pipeline/src/pipeline/.gitignore
vendored
|
|
@ -1,3 +0,0 @@
|
|||
|
||||
# Ignore dynaconf secret files
|
||||
.secrets.*
|
||||
|
|
@ -1,149 +0,0 @@
|
|||
"""
|
||||
Second Pipieline step:
|
||||
Once we have the features, we build a model
|
||||
"""
|
||||
|
||||
import os
|
||||
import yaml
|
||||
import pandas as pd
|
||||
from typing import Union, List
|
||||
from pathlib import Path
|
||||
from core.Logger import logger
|
||||
from core.interface.InterfaceMetrics import MLMetrics
|
||||
from core.interface.InterfaceModels import MLModel
|
||||
from core.interface.InterfaceDataClient import DataClient
|
||||
from core.DataClient import dataclient_factory
|
||||
from core.MLModels import model_factory
|
||||
from core.MLMetrics import metrics_factory
|
||||
from configs.post_prediction_logic import post_prediction_logic
|
||||
from config import settings
|
||||
|
||||
logger.info(f"--- Initiate Parameters ---")
|
||||
|
||||
RUNTIME_ENVIRONMENT = os.environ.get("RUNTIME_ENVIRONMENT", "local")
|
||||
|
||||
prepare_data_params = settings.prepare_data
|
||||
build_model_params = settings.build_model
|
||||
feature_process_params = settings.feature_processor
|
||||
generate_metrics_params = settings.generate_metrics
|
||||
generate_predictions_params = settings.generate_predictions
|
||||
|
||||
model_type = build_model_params["model_type"]
|
||||
target = feature_process_params["feature_processor_config"]["target"]
|
||||
fit_predictions_filepath = build_model_params["fit_predictions_filepath"]
|
||||
predictions_column_name = generate_predictions_params["predictions_column_name"]
|
||||
identifier_columns = feature_process_params["feature_processor_config"][
|
||||
"identifier_columns"
|
||||
]
|
||||
model_save_location = build_model_params["model_save_filepath"]
|
||||
model_hyperparameters = build_model_params[model_type]
|
||||
train_filepath = prepare_data_params["output_train_filepath"]
|
||||
test_filepath = prepare_data_params["output_test_filepath"]
|
||||
fit_metrics_filepath = build_model_params["fit_metrics_filepath"]
|
||||
|
||||
logger.info(f"--- Initiate DataClient ---")
|
||||
|
||||
# Output of previous prepare data step, will be where the data is
|
||||
dataclient = dataclient_factory(prepare_data_params["output_dataclient_type"])
|
||||
|
||||
logger.info(f"--- Initiate MLModel ---")
|
||||
|
||||
model = model_factory(model_type)
|
||||
|
||||
logger.info(f"--- Initiate Metrics ---")
|
||||
|
||||
metrics = metrics_factory(generate_metrics_params["metrics_type"])
|
||||
|
||||
|
||||
def build_model(
|
||||
dataclient: DataClient,
|
||||
model: MLModel,
|
||||
metrics: MLMetrics,
|
||||
target: str,
|
||||
identifier_columns: List[str],
|
||||
model_save_location: str,
|
||||
model_hyperparameters: dict,
|
||||
fit_predictions_filepath: str,
|
||||
predictions_column_name: str,
|
||||
fit_metrics_filepath: str,
|
||||
train_filepath: Union[str, None] = None,
|
||||
test_filepath: Union[str, None] = None,
|
||||
train_data: Union[pd.DataFrame, None] = None,
|
||||
test_data: Union[pd.DataFrame, None] = None,
|
||||
pipeline_mode: bool = False,
|
||||
):
|
||||
logger.info("--- Loading Data for build process ---")
|
||||
|
||||
if train_data is None:
|
||||
if train_filepath is None:
|
||||
raise ValueError(f"Need {train_filepath} if no data supplied")
|
||||
train_data = dataclient.load_data(location=train_filepath, load_config=None)
|
||||
|
||||
if test_data is None:
|
||||
if test_filepath is None:
|
||||
raise ValueError(f"Need {test_filepath} if no data supplied")
|
||||
test_data = dataclient.load_data(location=test_filepath, load_config=None)
|
||||
|
||||
logger.info("--- Training model ---")
|
||||
|
||||
model.train_model(
|
||||
data=train_data.drop(columns=identifier_columns),
|
||||
target=target,
|
||||
model_hyperparameters=model_hyperparameters,
|
||||
)
|
||||
|
||||
logger.info("--- Generating fit predictions ---")
|
||||
|
||||
fit_predictions = model.predict(
|
||||
data=train_data, post_prediction_logic=post_prediction_logic
|
||||
)
|
||||
|
||||
logger.info("--- Saving fit predictions ---")
|
||||
|
||||
predictions_df = pd.DataFrame(fit_predictions)
|
||||
predictions_df.columns = [predictions_column_name]
|
||||
|
||||
dataclient.save_data(
|
||||
obj=predictions_df, location=fit_predictions_filepath, save_config=None
|
||||
)
|
||||
|
||||
logger.info("--- Generating fit metrics ---")
|
||||
|
||||
metrics_output = metrics.generate_metrics(
|
||||
target=train_data[target],
|
||||
predictions=pd.Series(fit_predictions),
|
||||
)
|
||||
|
||||
logger.info("--- Saving model ---")
|
||||
|
||||
model.save_model(path=Path(model_save_location))
|
||||
|
||||
logger.info("--- Saving fit metrics ---")
|
||||
|
||||
dataclient.save_data(
|
||||
obj=metrics_output, location=fit_metrics_filepath, save_config=None
|
||||
)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
|
||||
logger.info(f"--- {__file__} - Start! ---")
|
||||
|
||||
logger.info(f"--- Build Model Stage ---")
|
||||
|
||||
build_model(
|
||||
dataclient=dataclient,
|
||||
model=model,
|
||||
metrics=metrics,
|
||||
target=target,
|
||||
identifier_columns=identifier_columns,
|
||||
model_save_location=model_save_location,
|
||||
model_hyperparameters=model_hyperparameters,
|
||||
train_filepath=train_filepath,
|
||||
test_filepath=test_filepath,
|
||||
fit_metrics_filepath=fit_metrics_filepath,
|
||||
fit_predictions_filepath=fit_predictions_filepath,
|
||||
predictions_column_name=predictions_column_name,
|
||||
)
|
||||
|
||||
logger.info(f"--- {__file__} - Complete! ---")
|
||||
|
|
@ -1,71 +0,0 @@
|
|||
"""
|
||||
Third part of the pipeline:
|
||||
After the model is built, we can evaluate its performance
|
||||
"""
|
||||
|
||||
import os
|
||||
from core.DataClient import dataclient_factory
|
||||
from core.MLModels import model_factory
|
||||
from core.Logger import logger
|
||||
from config import settings
|
||||
from generate_predictions import generate_predictions
|
||||
|
||||
logger.info(f"--- Initiate Parameters ---")
|
||||
|
||||
RUNTIME_ENVIRONMENT = os.environ.get("RUNTIME_ENVIRONMENT", "local")
|
||||
|
||||
client_params = settings.client
|
||||
prepare_data_params = settings.prepare_data
|
||||
build_model_params = settings.build_model
|
||||
generate_predictions_params = settings.generate_predictions
|
||||
feature_process_params = settings.feature_processor
|
||||
|
||||
input_dataclient_type = generate_predictions_params["input_dataclient_type"]
|
||||
output_dataclient_type = generate_predictions_params["output_dataclient_type"]
|
||||
|
||||
test_data_filepath = generate_predictions_params["test_data_filepath"]
|
||||
test_data_filepath = os.environ.get("PREDICTION_FILE", test_data_filepath)
|
||||
|
||||
target = feature_process_params["feature_processor_config"]["target"]
|
||||
model_filepath = build_model_params["model_save_filepath"]
|
||||
predictions_output_filepath = generate_predictions_params["predictions_output_filepath"]
|
||||
predictions_column_name = generate_predictions_params["predictions_column_name"]
|
||||
|
||||
logger.info(f"--- Initiate MLModel ---")
|
||||
|
||||
model = model_factory(build_model_params["model_type"])
|
||||
|
||||
logger.info(f"--- Initiate DataClient ---")
|
||||
|
||||
# We may have different locations of loading hence why we use one specified in generate_predictions.yaml
|
||||
# I.e. for metric runs, this will be a local data client
|
||||
# For predictions, we will want a cloud data client
|
||||
input_dataclient = dataclient_factory(
|
||||
dataclient_type=input_dataclient_type,
|
||||
dataclient_config=client_params[input_dataclient_type],
|
||||
)
|
||||
|
||||
output_dataclient = dataclient_factory(
|
||||
dataclient_type=output_dataclient_type,
|
||||
dataclient_config=client_params[output_dataclient_type],
|
||||
)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
|
||||
logger.info(f"--- {__file__} - Start! ---")
|
||||
|
||||
logger.info(f"--- Generate Predictions Stage---")
|
||||
|
||||
generate_predictions(
|
||||
input_dataclient=input_dataclient,
|
||||
output_dataclient=output_dataclient,
|
||||
model=model,
|
||||
target=target,
|
||||
model_filepath=model_filepath,
|
||||
test_data_filepath=test_data_filepath,
|
||||
predictions_output_filepath=predictions_output_filepath,
|
||||
predictions_column_name=predictions_column_name,
|
||||
)
|
||||
|
||||
logger.info(f"--- {__file__} - Complete! ---")
|
||||
|
|
@ -1,113 +0,0 @@
|
|||
"""
|
||||
Third part of the pipeline:
|
||||
After the model is built, we can evaluate its performance
|
||||
"""
|
||||
|
||||
import os
|
||||
import yaml
|
||||
import pandas as pd
|
||||
from pathlib import Path
|
||||
from core.interface.InterfaceModels import MLModel
|
||||
from core.interface.InterfaceMetrics import MLMetrics
|
||||
from core.interface.InterfaceDataClient import DataClient
|
||||
from core.DataClient import dataclient_factory
|
||||
from core.MLModels import model_factory
|
||||
from core.MLMetrics import metrics_factory
|
||||
from core.Logger import logger
|
||||
from config import settings
|
||||
|
||||
logger.info(f"--- Initiate Parameters ---")
|
||||
|
||||
RUNTIME_ENVIRONMENT = os.environ.get("RUNTIME_ENVIRONMENT", "local")
|
||||
|
||||
client_params = settings.client
|
||||
prepare_data_params = settings.prepare_data
|
||||
build_model_params = settings.build_model
|
||||
generate_predictions_params = settings.generate_predictions
|
||||
generate_metrics_params = settings.generate_metrics
|
||||
feature_process_params = settings.feature_processor
|
||||
|
||||
target = feature_process_params["feature_processor_config"]["target"]
|
||||
test_data_filepath = generate_predictions_params["test_data_filepath"]
|
||||
predictions_output_filepath = generate_predictions_params["predictions_output_filepath"]
|
||||
predictions_column_name = generate_predictions_params["predictions_column_name"]
|
||||
metrics_output_filepath = generate_metrics_params["metrics_output_filepath"]
|
||||
|
||||
logger.info(f"--- Initiate MLModel ---")
|
||||
|
||||
model = model_factory(build_model_params["model_type"])
|
||||
|
||||
logger.info(f"--- Initiate DataClient ---")
|
||||
|
||||
# Use data client for input and output, as we use dvc to cache later to the cloud
|
||||
dataclient_type = generate_metrics_params["dataclient_type"]
|
||||
dataclient = dataclient_factory(
|
||||
dataclient_type=dataclient_type,
|
||||
dataclient_config=client_params[dataclient_type],
|
||||
)
|
||||
|
||||
logger.info(f"--- Initiate MLMetrics ---")
|
||||
|
||||
metrics = metrics_factory(generate_metrics_params["metrics_type"])
|
||||
|
||||
|
||||
def generate_metrics(
|
||||
input_dataclient: DataClient,
|
||||
output_dataclient: DataClient,
|
||||
model: MLModel,
|
||||
metrics: MLMetrics,
|
||||
target: str,
|
||||
test_data_filepath: str,
|
||||
predictions_output_filepath: str,
|
||||
predictions_column_name: str,
|
||||
metrics_output_filepath: str,
|
||||
):
|
||||
"""
|
||||
For a given model, we generate prediction and evaluate this against the true target
|
||||
"""
|
||||
|
||||
logger.info("--- Loading test data ---")
|
||||
|
||||
test_data = input_dataclient.load_data(
|
||||
location=test_data_filepath, load_config=None
|
||||
)
|
||||
|
||||
logger.info("--- Loading predictions ---")
|
||||
|
||||
predictions = input_dataclient.load_data(
|
||||
location=predictions_output_filepath, load_config=None
|
||||
)
|
||||
|
||||
logger.info("--- Generating metrics ---")
|
||||
|
||||
metrics_output = metrics.generate_metrics(
|
||||
target=test_data[target],
|
||||
predictions=pd.Series(predictions[predictions_column_name]),
|
||||
)
|
||||
|
||||
logger.info("--- Saving metrics ---")
|
||||
|
||||
output_dataclient.save_data(
|
||||
obj=metrics_output, location=metrics_output_filepath, save_config=None
|
||||
)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
|
||||
logger.info(f"--- {__file__} - Start! ---")
|
||||
|
||||
logger.info(f"--- Generate Metrics Stage---")
|
||||
|
||||
generate_metrics(
|
||||
input_dataclient=dataclient,
|
||||
output_dataclient=dataclient,
|
||||
model=model,
|
||||
metrics=metrics,
|
||||
target=target,
|
||||
test_data_filepath=test_data_filepath,
|
||||
predictions_output_filepath=predictions_output_filepath,
|
||||
predictions_column_name=predictions_column_name,
|
||||
metrics_output_filepath=metrics_output_filepath,
|
||||
)
|
||||
|
||||
logger.info(f"--- {__file__} - Complete! ---")
|
||||
|
|
@ -1,162 +0,0 @@
|
|||
"""
|
||||
Fourth part of the pipeline:
|
||||
After the model is built and metrics are generated,
|
||||
we want to test this model against known scenarios
|
||||
"""
|
||||
|
||||
import os
|
||||
import pandas as pd
|
||||
from core.interface.InterfaceModels import MLModel
|
||||
from core.interface.InterfaceDataClient import DataClient
|
||||
from core.interface.InterfaceMetrics import MLMetrics
|
||||
from configs.post_prediction_logic import post_prediction_logic
|
||||
from core.DataClient import dataclient_factory
|
||||
from core.MLModels import model_factory
|
||||
from core.MLMetrics import metrics_factory
|
||||
from core.Logger import logger
|
||||
from config import settings
|
||||
|
||||
logger.info(f"--- Initiate Parameters ---")
|
||||
|
||||
RUNTIME_ENVIRONMENT = os.environ.get("RUNTIME_ENVIRONMENT", "local")
|
||||
|
||||
client_params = settings.client
|
||||
prepare_data_params = settings.prepare_data
|
||||
build_model_params = settings.build_model
|
||||
generate_predictions_params = settings.generate_predictions
|
||||
generate_metrics_params = settings.generate_metrics
|
||||
feature_process_params = settings.feature_processor
|
||||
scenarios_params = settings.scenarios
|
||||
|
||||
model_filepath = build_model_params["model_save_filepath"]
|
||||
target = feature_process_params["feature_processor_config"]["target"]
|
||||
scenario_data_filepaths = scenarios_params["scenario_data_filepaths"]
|
||||
predictions_column_name = generate_predictions_params["predictions_column_name"]
|
||||
comparison_output_filepath = scenarios_params["comparison_output_filepath"]
|
||||
metrics_output_filepath = scenarios_params["metrics_output_filepath"]
|
||||
|
||||
logger.info(f"--- Initiate MLModel ---")
|
||||
|
||||
model = model_factory(build_model_params["model_type"])
|
||||
|
||||
logger.info(f"--- Initiate DataClient ---")
|
||||
|
||||
# Use data client for input and output, as we use dvc to cache later to the cloud
|
||||
input_dataclient_type = scenarios_params["input_dataclient_type"]
|
||||
input_dataclient = dataclient_factory(
|
||||
dataclient_type=input_dataclient_type,
|
||||
dataclient_config=client_params[input_dataclient_type],
|
||||
)
|
||||
|
||||
output_dataclient_type = scenarios_params["output_dataclient_type"]
|
||||
output_dataclient = dataclient_factory(
|
||||
dataclient_type=output_dataclient_type,
|
||||
dataclient_config=client_params[output_dataclient_type],
|
||||
)
|
||||
|
||||
logger.info(f"--- Initiate MLMetrics ---")
|
||||
|
||||
metrics = metrics_factory(generate_metrics_params["metrics_type"])
|
||||
|
||||
|
||||
def generate_scenario_predictions(
|
||||
input_dataclient: DataClient,
|
||||
output_dataclient: DataClient,
|
||||
model: MLModel,
|
||||
metrics: MLMetrics,
|
||||
model_filepath: str,
|
||||
scenario_data_filepaths: list,
|
||||
predictions_column_name: str,
|
||||
comparison_output_filepath: str,
|
||||
metrics_output_filepath: str,
|
||||
):
|
||||
"""
|
||||
Given the new model, we generate prediction for expected scenarios
|
||||
"""
|
||||
|
||||
logger.info("--- Loading Scenario Data ---")
|
||||
|
||||
scenario_data = pd.DataFrame()
|
||||
|
||||
# If we have no scenario data, we can save empty dataframes
|
||||
if scenario_data_filepaths is None:
|
||||
logger.info("No scenario data filepaths provided")
|
||||
output_dataclient.save_data(
|
||||
obj=scenario_data, location=comparison_output_filepath, save_config=None
|
||||
)
|
||||
|
||||
output_dataclient.save_data(
|
||||
obj=scenario_data, location=metrics_output_filepath, save_config=None
|
||||
)
|
||||
return
|
||||
|
||||
# Can have multiple scenario data files
|
||||
for scenario_data_filepath in scenario_data_filepaths:
|
||||
scenario_data = pd.concat(
|
||||
[
|
||||
scenario_data,
|
||||
input_dataclient.load_data(scenario_data_filepath, load_config=None),
|
||||
]
|
||||
)
|
||||
|
||||
logger.info("--- Loading Model ---")
|
||||
|
||||
model.load_model(model_filepath)
|
||||
|
||||
logger.info("--- Generating Predictions ---")
|
||||
|
||||
predictions = model.predict(
|
||||
data=scenario_data, post_prediction_logic=post_prediction_logic
|
||||
)
|
||||
|
||||
logger.info("--- Generate Scenario Predicted Impact ---")
|
||||
|
||||
predictions_df = pd.DataFrame(predictions)
|
||||
predictions_df.columns = [predictions_column_name]
|
||||
|
||||
scenario_data = pd.concat([scenario_data, predictions_df], axis=1)
|
||||
scenario_data["predicted_impact"] = abs(
|
||||
scenario_data[predictions_column_name] - scenario_data["sap_starting"]
|
||||
)
|
||||
|
||||
logger.info("--- Generate Metrics ---")
|
||||
|
||||
metrics_dict = metrics.generate_metrics(
|
||||
scenario_data["impact"], scenario_data["predicted_impact"]
|
||||
)
|
||||
|
||||
metrics_df = pd.DataFrame(metrics_dict, index=[0]).T.reset_index()
|
||||
metrics_df.columns = ["metric", "value"]
|
||||
|
||||
logger.info("--- Save prediction into metrics ---")
|
||||
|
||||
output_df = scenario_data[["uprn", "id", "impact", "predicted_impact"]]
|
||||
|
||||
output_dataclient.save_data(
|
||||
obj=output_df, location=comparison_output_filepath, save_config=None
|
||||
)
|
||||
|
||||
output_dataclient.save_data(
|
||||
obj=metrics_df, location=metrics_output_filepath, save_config=None
|
||||
)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
|
||||
logger.info(f"--- {__file__} - Start! ---")
|
||||
|
||||
logger.info(f"--- Generate Scenario Predictions ---")
|
||||
|
||||
generate_scenario_predictions(
|
||||
input_dataclient=input_dataclient,
|
||||
output_dataclient=output_dataclient,
|
||||
model=model,
|
||||
metrics=metrics,
|
||||
model_filepath=model_filepath,
|
||||
scenario_data_filepaths=scenario_data_filepaths,
|
||||
predictions_column_name=predictions_column_name,
|
||||
comparison_output_filepath=comparison_output_filepath,
|
||||
metrics_output_filepath=metrics_output_filepath,
|
||||
)
|
||||
|
||||
logger.info(f"--- {__file__} - Complete! ---")
|
||||
|
|
@ -37,4 +37,3 @@ Workflow:
|
|||
- This experiment will have the corresponding .dvc files for the hashed model and data
|
||||
- Use version control as normal
|
||||
- git add, git commit etc
|
||||
- To revert change, use `git checkout {COMMIT_HASH}`, followed by `git switch -c {NEW_BRANCH_NAME}`
|
||||
|
|
|
|||
Binary file not shown.
147
modules/ml-pipeline/src/pipeline/build_model.py
Normal file
147
modules/ml-pipeline/src/pipeline/build_model.py
Normal file
|
|
@ -0,0 +1,147 @@
|
|||
"""
|
||||
Second Pipieline step:
|
||||
Once we have the features, we build a model
|
||||
"""
|
||||
|
||||
import os
|
||||
import yaml
|
||||
import pandas as pd
|
||||
from typing import Union
|
||||
from pathlib import Path
|
||||
from core.Logger import logger
|
||||
from core.interface.InterfaceMetrics import MLMetrics
|
||||
from core.interface.InterfaceModels import MLModel
|
||||
from core.interface.InterfaceDataClient import DataClient
|
||||
from core.DataClient import dataclient_factory
|
||||
from core.MLModels import model_factory
|
||||
from core.MLMetrics import metrics_factory
|
||||
|
||||
|
||||
RUNTIME_ENVIRONMENT = os.environ.get("RUNTIME_ENVIRONMENT", "local")
|
||||
|
||||
prepare_data_path = Path(__file__).parent / "configs" / "prepare_data.yaml"
|
||||
prepare_data_params = yaml.safe_load(open(prepare_data_path))
|
||||
|
||||
build_model_path = Path(__file__).parent / "configs" / "build_model.yaml"
|
||||
build_model_params = yaml.safe_load(open(build_model_path))
|
||||
|
||||
feature_process_path = Path(__file__).parent / "configs" / "feature_processor.yaml"
|
||||
feature_process_params = yaml.safe_load(open(feature_process_path))
|
||||
|
||||
generate_metrics_path = Path(__file__).parent / "configs" / "generate_metrics.yaml"
|
||||
generate_metrics_params = yaml.safe_load(open(generate_metrics_path))
|
||||
|
||||
|
||||
def build_model(
|
||||
dataclient: DataClient,
|
||||
model: MLModel,
|
||||
metrics: MLMetrics,
|
||||
target: str,
|
||||
model_save_location: str,
|
||||
model_hyperparameters: dict,
|
||||
fit_metrics_filepath: str,
|
||||
train_filepath: Union[str, None] = None,
|
||||
test_filepath: Union[str, None] = None,
|
||||
train_data: Union[pd.DataFrame, None] = None,
|
||||
test_data: Union[pd.DataFrame, None] = None,
|
||||
pipeline_mode: bool = False,
|
||||
):
|
||||
logger.info("--------------------------------------")
|
||||
logger.info("--- Loading Data for build process ---")
|
||||
logger.info("--------------------------------------")
|
||||
|
||||
if train_data is None:
|
||||
if train_filepath is None:
|
||||
raise ValueError(f"Need {train_filepath} if no data supplied")
|
||||
train_data = dataclient.load_data(location=train_filepath, load_config=None)
|
||||
|
||||
if test_data is None:
|
||||
if test_filepath is None:
|
||||
raise ValueError(f"Need {test_filepath} if no data supplied")
|
||||
test_data = dataclient.load_data(location=test_filepath, load_config=None)
|
||||
|
||||
logger.info("----------------------")
|
||||
logger.info("--- Training model ---")
|
||||
logger.info("----------------------")
|
||||
|
||||
model.train_model(
|
||||
data=train_data, target=target, model_hyperparameters=model_hyperparameters
|
||||
)
|
||||
|
||||
logger.info("----------------------------------")
|
||||
logger.info("--- Generating fit predictions ---")
|
||||
logger.info("----------------------------------")
|
||||
|
||||
prediction_data = train_data.drop(columns=target)
|
||||
|
||||
fit_predictions = model.predict(data=prediction_data)
|
||||
|
||||
logger.info("------------------------------")
|
||||
logger.info("--- Generating fit metrics ---")
|
||||
logger.info("------------------------------")
|
||||
|
||||
metrics_output = metrics.generate_metrics(
|
||||
target=train_data[target],
|
||||
predictions=pd.Series(fit_predictions),
|
||||
)
|
||||
|
||||
logger.info("--------------------")
|
||||
logger.info("--- Saving model ---")
|
||||
logger.info("--------------------")
|
||||
|
||||
model.save_model(path=Path(model_save_location))
|
||||
|
||||
logger.info("--------------------------")
|
||||
logger.info("--- Saving fit metrics ---")
|
||||
logger.info("--------------------------")
|
||||
|
||||
dataclient.save_data(
|
||||
obj=metrics_output, location=fit_metrics_filepath, save_config=None
|
||||
)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
|
||||
logger.info("----------------------------")
|
||||
logger.info(f"--- {__file__} - Start! ---")
|
||||
logger.info("----------------------------")
|
||||
|
||||
logger.info("----------------------------")
|
||||
logger.info(f"--- Initiate DataClient ---")
|
||||
logger.info("----------------------------")
|
||||
|
||||
# Output of previous prepare data step, will be where the data is
|
||||
dataclient = dataclient_factory(prepare_data_params["output_dataclient_type"])
|
||||
|
||||
logger.info("-------------------------")
|
||||
logger.info(f"--- Initiate MLModel ---")
|
||||
logger.info("-------------------------")
|
||||
|
||||
model_type = build_model_params["model_type"]
|
||||
model = model_factory(model_type)
|
||||
|
||||
logger.info("-------------------------")
|
||||
logger.info(f"--- Initiate Metrics ---")
|
||||
logger.info("-------------------------")
|
||||
|
||||
metrics = metrics_factory(generate_metrics_params["metrics_type"])
|
||||
|
||||
logger.info("--------------------------")
|
||||
logger.info(f"--- Build Model Stage ---")
|
||||
logger.info("--------------------------")
|
||||
|
||||
build_model(
|
||||
dataclient=dataclient,
|
||||
model=model,
|
||||
metrics=metrics,
|
||||
target=feature_process_params["feature_processor_config"]["target"],
|
||||
model_save_location=build_model_params["model_save_filepath"],
|
||||
model_hyperparameters=build_model_params[model_type],
|
||||
train_filepath=prepare_data_params["output_train_filepath"],
|
||||
test_filepath=prepare_data_params["output_test_filepath"],
|
||||
fit_metrics_filepath=build_model_params["fit_metrics_filepath"],
|
||||
)
|
||||
|
||||
logger.info("-------------------------------")
|
||||
logger.info(f"--- {__file__} - Complete! ---")
|
||||
logger.info("-------------------------------")
|
||||
|
|
@ -1,15 +0,0 @@
|
|||
from dynaconf import Dynaconf
|
||||
|
||||
settings = Dynaconf(
|
||||
environments=True,
|
||||
envvar_prefix="DYNACONF",
|
||||
settings_files=[
|
||||
"./configs/settings.yaml",
|
||||
"./configs/build_model.yaml",
|
||||
"./configs/analysis.yaml",
|
||||
"./configs/scenarios.yaml",
|
||||
],
|
||||
)
|
||||
|
||||
# `envvar_prefix` = export envvars with `export DYNACONF_FOO=bar`.
|
||||
# `settings_files` = Load these files in the order.
|
||||
|
|
@ -1,16 +0,0 @@
|
|||
default:
|
||||
model_analysis:
|
||||
dataclient_type: local
|
||||
feature_importance_filepath: ./analysis/feature_importance.parquet
|
||||
permutation_subsample_amount: 1000
|
||||
loss_fns: "mean_absolute_percentage_error"
|
||||
feature_importance_column: importance
|
||||
n_repeats: 5
|
||||
figwidth: 7
|
||||
figheight: 6
|
||||
|
||||
prediction_analysis:
|
||||
dataclient_type: local
|
||||
nshap_samples: 100 # how many samples to use to approximate each Shapely value, larger values will be slower
|
||||
n_val: 30 # how many datapoints from validation data should we interpret predictions for, larger values will be slower
|
||||
row_index: [20695, 50243, 7653] # index of an example datapoint
|
||||
|
|
@ -1,22 +1,16 @@
|
|||
default:
|
||||
build_model:
|
||||
model_type: AutogluonAutoML
|
||||
model_save_filepath: ./data/model/optimised/
|
||||
fit_metrics_filepath: ./metrics/fit_metrics.json
|
||||
fit_predictions_filepath: ./data/fit_predictions/predictions.parquet
|
||||
model_type: AutogluonAutoML
|
||||
model_save_filepath: ./data/model/autogluonmodel/
|
||||
fit_metrics_filepath: ./metrics/fit_metrics.json
|
||||
|
||||
SKLearnLinearRegression: null
|
||||
SKLearnLinearRegression: null
|
||||
|
||||
SKLearnSVMRegression:
|
||||
kernel: "linear"
|
||||
SKLearnSVMRegression:
|
||||
kernel: "linear"
|
||||
|
||||
AutogluonAutoML:
|
||||
output_filepath: ./data/model/allmodels/
|
||||
problem_type: regression
|
||||
eval_metric: mean_squared_error #mean_absolute_error
|
||||
time_limit: 1800
|
||||
presets: medium_quality
|
||||
excluded_model_types: ['RF', 'CAT', 'NN_TORCH', 'KNN', 'XT']
|
||||
infer_limit: 0.05
|
||||
infer_limit_batch_size: 10000
|
||||
ag_args_ensemble: {'num_folds_parallel': 2}
|
||||
AutogluonAutoML:
|
||||
output_filepath: ./data/model/autogluonmodel/
|
||||
problem_type: regression
|
||||
eval_metric: mean_absolute_error
|
||||
time_limit: 60
|
||||
presets: medium_quality
|
||||
excluded_model_types: ['KNN']
|
||||
|
|
|
|||
10
modules/ml-pipeline/src/pipeline/configs/client.yaml
Normal file
10
modules/ml-pipeline/src/pipeline/configs/client.yaml
Normal file
|
|
@ -0,0 +1,10 @@
|
|||
aws-s3:
|
||||
AWS_ACCESS_KEY_ID: null
|
||||
AWS_SECRET_ACCESS_KEY: null
|
||||
ENDPOINT_URL: null
|
||||
aws-s3-mock:
|
||||
AWS_ACCESS_KEY_ID: minio
|
||||
AWS_SECRET_ACCESS_KEY: minio123
|
||||
ENDPOINT_URL: http://localhost:9000
|
||||
local:
|
||||
null
|
||||
3
modules/ml-pipeline/src/pipeline/configs/configs.py
Normal file
3
modules/ml-pipeline/src/pipeline/configs/configs.py
Normal file
|
|
@ -0,0 +1,3 @@
|
|||
"""
|
||||
Stitch all yaml configuration files together, override some settings (such as bucket location) based off environment variables
|
||||
"""
|
||||
|
|
@ -0,0 +1,60 @@
|
|||
feature_processor_type: dataframe
|
||||
feature_processor_config:
|
||||
subsample_amount: null
|
||||
subsample_seed: 0
|
||||
target: SAP_ENDING
|
||||
drop_columns: ["UPRN", "HEAT_DEMAND_CHANGE", "CARBON_CHANGE", "RDSAP_CHANGE"]
|
||||
# retain_features: ["TOTAL_FLOOR_AREA_STARTING", "SAP_STARTING", "HEAT_DEMAND_STARTING", "CARBON_STARTING", "NUMBER_HABITABLE_ROOMS", "NUMBER_HEATED_ROOMS", "FIXED_LIGHTING_OUTLETS_COUNT", "PHOTO_SUPPLY_STARTING", "MULTI_GLAZE_PROPORTION_STARTING", "LOW_ENERGY_LIGHTING_STARTING", "NUMBER_OPEN_FIREPLACES_STARTING", "EXTENSION_COUNT_STARTING", "FLOOR_HEIGHT_STARTING", "PHOTO_SUPPLY_ENDING", "MULTI_GLAZE_PROPORTION_ENDING", "LOW_ENERGY_LIGHTING_ENDING", "NUMBER_OPEN_FIREPLACES_ENDING", "EXTENSION_COUNT_ENDING", "TOTAL_FLOOR_AREA_ENDING", "FLOOR_HEIGHT_ENDING", "DAYS_TO_STARTING", "DAYS_TO_ENDING"]
|
||||
# retain_features: null
|
||||
# retain_features: ["SAP_STARTING", 'PROPERTY_TYPE', 'BUILT_FORM', 'CONSTITUENCY', 'NUMBER_HABITABLE_ROOMS',
|
||||
# 'NUMBER_HEATED_ROOMS',
|
||||
# 'FIXED_LIGHTING_OUTLETS_COUNT',
|
||||
# 'CONSTRUCTION_AGE_BAND',
|
||||
# 'TRANSACTION_TYPE_STARTING',
|
||||
# 'LIGHTING_DESCRIPTION_STARTING',
|
||||
# 'MAINHEAT_DESCRIPTION_STARTING',
|
||||
# 'HOTWATER_DESCRIPTION_STARTING',
|
||||
# 'MAIN_FUEL_STARTING',
|
||||
# 'MECHANICAL_VENTILATION_STARTING',
|
||||
# 'SECONDHEAT_DESCRIPTION_STARTING',
|
||||
# 'ENERGY_TARIFF_STARTING',
|
||||
# 'SOLAR_WATER_HEATING_FLAG_STARTING',
|
||||
# 'PHOTO_SUPPLY_STARTING',
|
||||
# 'WINDOWS_DESCRIPTION_STARTING',
|
||||
# 'GLAZED_TYPE_STARTING',
|
||||
# 'MULTI_GLAZE_PROPORTION_STARTING',
|
||||
# 'LOW_ENERGY_LIGHTING_STARTING',
|
||||
# 'NUMBER_OPEN_FIREPLACES_STARTING',
|
||||
# 'MAINHEATCONT_DESCRIPTION_STARTING',
|
||||
# 'EXTENSION_COUNT_STARTING',
|
||||
# 'TOTAL_FLOOR_AREA_STARTING',
|
||||
# 'FLOOR_HEIGHT_STARTING',
|
||||
# 'DAYS_TO_STARTING',
|
||||
# 'WALLS_DESCRIPTION_STARTING',
|
||||
# 'FLOOR_DESCRIPTION_STARTING']
|
||||
retain_features: ["SAP_STARTING", 'PROPERTY_TYPE', 'BUILT_FORM', 'CONSTITUENCY', 'NUMBER_HABITABLE_ROOMS',
|
||||
'NUMBER_HEATED_ROOMS',
|
||||
'FIXED_LIGHTING_OUTLETS_COUNT',
|
||||
'CONSTRUCTION_AGE_BAND',
|
||||
'TRANSACTION_TYPE_ENDING',
|
||||
'LIGHTING_DESCRIPTION_ENDING',
|
||||
'MAINHEAT_DESCRIPTION_ENDING',
|
||||
'HOTWATER_DESCRIPTION_ENDING',
|
||||
'MAIN_FUEL_ENDING',
|
||||
'MECHANICAL_VENTILATION_ENDING',
|
||||
'SECONDHEAT_DESCRIPTION_ENDING',
|
||||
'ENERGY_TARIFF_ENDING',
|
||||
'SOLAR_WATER_HEATING_FLAG_ENDING',
|
||||
'PHOTO_SUPPLY_ENDING',
|
||||
'WINDOWS_DESCRIPTION_ENDING',
|
||||
'GLAZED_TYPE_ENDING',
|
||||
'MULTI_GLAZE_PROPORTION_ENDING',
|
||||
'LOW_ENERGY_LIGHTING_ENDING',
|
||||
'NUMBER_OPEN_FIREPLACES_ENDING',
|
||||
'MAINHEATCONT_DESCRIPTION_ENDING',
|
||||
'EXTENSION_COUNT_ENDING',
|
||||
'TOTAL_FLOOR_AREA_ENDING',
|
||||
'FLOOR_HEIGHT_ENDING',
|
||||
'DAYS_TO_ENDING',
|
||||
'WALLS_DESCRIPTION_ENDING',
|
||||
'FLOOR_DESCRIPTION_ENDING']
|
||||
|
|
@ -5,71 +5,16 @@ During the feature processor step, we can apply additional business logic and fe
|
|||
"""
|
||||
Business Logic dict + functions
|
||||
"""
|
||||
|
||||
|
||||
def remove_starting_columns(df):
|
||||
keep_column_index = [
|
||||
False if col_name.endswith("_starting") else True
|
||||
for col_name in list(df.columns)
|
||||
]
|
||||
keep_columns = df.columns[keep_column_index].to_list()
|
||||
keep_columns.append("sap_starting")
|
||||
df = df[keep_columns]
|
||||
return df
|
||||
|
||||
|
||||
def remove_floor_height_ending(df):
|
||||
# df.describe(percentiles=[0.005,0.99])['FLOOR_HEIGHT_ENDING']
|
||||
# shows bottom 0.5 percentile is 1.665
|
||||
# So keep anything above this
|
||||
df = df[df["floor_height_ending"] > 1.665].reset_index(drop=True)
|
||||
print("we in here")
|
||||
return df
|
||||
|
||||
|
||||
def remove_minimum_habitable_room_size(df):
|
||||
# Need minimum of 6.5m per habitable room
|
||||
df = df[
|
||||
df["total_floor_area_ending"] / df["number_habitable_rooms"] > 6.5
|
||||
].reset_index(drop=True)
|
||||
return df
|
||||
|
||||
|
||||
def keep_flats(df):
|
||||
df = df[df["property_type"] == "Flat"]
|
||||
return df
|
||||
|
||||
|
||||
def keep_non_zero_rdsap(df):
|
||||
df = df[df["rdsap_change"] != 0]
|
||||
return df
|
||||
|
||||
|
||||
# def keep_ending_columns(df):
|
||||
# ending_column_index = [ col_name.endswith("_ENDING") for col_name in list(df.columns)]
|
||||
# keep_columns = df.columns[ending_column_index].to_list()
|
||||
# keep_columns.append("SAP_STARTING")
|
||||
# print(keep_columns)
|
||||
# df = df[keep_columns]
|
||||
# return df
|
||||
|
||||
business_logic = {
|
||||
# "keep_non_zero_rdsap": keep_non_zero_rdsap,
|
||||
# "keep_flats": keep_flats,
|
||||
# "remove_minimum_habitable_room_size": remove_minimum_habitable_room_size,
|
||||
# "remove_floor_height_ending": remove_floor_height_ending
|
||||
# "remove_starting_columns": remove_starting_columns
|
||||
# "keep_ENDING_COLUMNS": keep_ending_columns
|
||||
}
|
||||
business_logic = {}
|
||||
|
||||
"""
|
||||
New features dict + function
|
||||
"""
|
||||
|
||||
|
||||
# def SAP_ENDING(df):
|
||||
# return df["SAP_STARTING"] + df["RDSAP_CHANGE"]
|
||||
def SAP_ENDING(df):
|
||||
return df["SAP_STARTING"] + df["RDSAP_CHANGE"]
|
||||
|
||||
|
||||
# new_feature_funcs = {"SAP_ENDING": SAP_ENDING}
|
||||
new_feature_funcs = {}
|
||||
new_feature_funcs = {"SAP_ENDING": SAP_ENDING}
|
||||
# new_feature_funcs = {}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,3 @@
|
|||
dataclient_type: local
|
||||
metrics_type: Regression
|
||||
metrics_output_filepath: ./metrics/metrics.json
|
||||
|
|
@ -0,0 +1,5 @@
|
|||
input_dataclient_type: local
|
||||
output_dataclient_type: local
|
||||
test_data_filepath: ./data/prepared_data/test.parquet
|
||||
predictions_output_filepath: ./data/predictions/predictions.parquet
|
||||
predictions_column_name: predictions
|
||||
|
|
@ -0,0 +1,8 @@
|
|||
dataclient_type: local
|
||||
feature_importance_filepath: ./analysis/feature_importance.parquet
|
||||
permutation_subsample_amount: 1000
|
||||
loss_fns: "mean_absolute_percentage_error"
|
||||
feature_importance_column: importance
|
||||
n_repeats: 5
|
||||
figwidth: 7
|
||||
figheight: 6
|
||||
|
|
@ -1,35 +0,0 @@
|
|||
"""
|
||||
After predictions, we may want to apply some post processing to the predictions
|
||||
"""
|
||||
import pandas as pd
|
||||
|
||||
|
||||
def clip_predictions_to_minimum_value(
|
||||
data: pd.DataFrame, predictions: pd.Series, minimum_value: int = 0
|
||||
) -> pd.Series:
|
||||
|
||||
series_name = predictions.name
|
||||
predictions.name = "predictions"
|
||||
predictions_df = pd.concat([data, predictions], axis=1)
|
||||
# We expect all prediction to be atleast one point improvement
|
||||
replace_index = (
|
||||
predictions_df["sap_starting"] + minimum_value > predictions_df["predictions"]
|
||||
)
|
||||
predictions_df.loc[replace_index, "predictions"] = (
|
||||
predictions_df.loc[replace_index, "sap_starting"] + minimum_value
|
||||
)
|
||||
|
||||
predictions_new = predictions_df["predictions"]
|
||||
predictions_new.name = series_name
|
||||
return predictions_new
|
||||
|
||||
|
||||
# def round_predictions(data: pd.DataFrame, predictions: pd.Series) -> pd.Series:
|
||||
|
||||
# return predictions.round()
|
||||
|
||||
|
||||
post_prediction_logic = {
|
||||
"clip_predictions_to_minimum_value": clip_predictions_to_minimum_value,
|
||||
# "round_predictions": round_predictions
|
||||
}
|
||||
|
|
@ -0,0 +1,8 @@
|
|||
input_dataclient_type: aws-s3
|
||||
output_dataclient_type: local
|
||||
data_filepath: s3://retrofit-data-dev/sap_change_model/dataset.parquet
|
||||
train_proportion: 0.9
|
||||
output_train_filepath: ./data/prepared_data/train.parquet
|
||||
output_test_filepath: ./data/prepared_data/test.parquet
|
||||
|
||||
# cache_o
|
||||
|
|
@ -1,13 +0,0 @@
|
|||
default:
|
||||
scenarios:
|
||||
input_dataclient_type: aws-s3
|
||||
output_dataclient_type: local
|
||||
scenario_data_filepaths:
|
||||
# - s3://retrofit-data-dev/scenario_data/22-03-2024-19-20-09/recommendations_scoring_data.parquet
|
||||
# - s3://retrofit-data-dev/scenario_data/24-03-2024-20-23-25/recommendations_scoring_data.parquet
|
||||
# - s3://retrofit-data-dev/scenario_data/27-03-2024-11-38-15/recommendations_scoring_data.parquet
|
||||
# - s3://retrofit-data-dev/scenario_data/26-05-2024-08-47-45/recommendations_scoring_data.parquet
|
||||
# - s3://retrofit-data-dev/scenario_data/26-05-2024-10-44-53/recommendations_scoring_data.parquet
|
||||
- s3://retrofit-data-dev/scenario_data/28-05-2024-19-22-41/recommendations_scoring_data.parquet
|
||||
comparison_output_filepath: ./metrics/scenario_table.md
|
||||
metrics_output_filepath: ./metrics/scenario_metrics.md
|
||||
|
|
@ -1,81 +0,0 @@
|
|||
default:
|
||||
startup_cleanup:
|
||||
artefacts: ./data
|
||||
metrics: ./metrics
|
||||
|
||||
client:
|
||||
aws-s3:
|
||||
AWS_ACCESS_KEY_ID: null # Use local credentials
|
||||
AWS_SECRET_ACCESS_KEY: null # Use local credentials
|
||||
ENDPOINT_URL: null # Use local credentials
|
||||
aws-s3-mock:
|
||||
AWS_ACCESS_KEY_ID: minio
|
||||
AWS_SECRET_ACCESS_KEY: minio123
|
||||
ENDPOINT_URL: http://localhost:9000
|
||||
local:
|
||||
null
|
||||
|
||||
prepare_data:
|
||||
input_dataclient_type: aws-s3
|
||||
output_dataclient_type: local
|
||||
# data_filepath: s3://retrofit-data-dev/sap_change_model/2024-03-22-18-56-53/dataset_rooms.parquet
|
||||
# data_filepath: s3://retrofit-data-dev/sap_change_model/2024-05-25-08-36-36/dataset_rooms.parquet
|
||||
# data_filepath: s3://retrofit-data-dev/sap_change_model/2024-05-26-10-31-39/dataset_rooms.parquet
|
||||
data_filepath: s3://retrofit-data-dev/sap_change_model/2024-05-28-19-08-25/dataset_rooms.parquet
|
||||
train_proportion: 0.9
|
||||
output_train_filepath: ./data/prepared_data/train.parquet
|
||||
output_test_filepath: ./data/prepared_data/test.parquet
|
||||
|
||||
feature_processor:
|
||||
feature_processor_type: dataframe
|
||||
feature_processor_config:
|
||||
subsample_amount: null
|
||||
subsample_seed: 0
|
||||
target: sap_ending
|
||||
identifier_columns: ["uprn"]
|
||||
# drop_columns: ["heat_demand_change", "carbon_change", "rdsap_change", "heat_demand_ending", "carbon_ending", "days_to_starting", "days_to_ending"]
|
||||
drop_columns: [
|
||||
"heat_demand_change", "carbon_change", "rdsap_change", "heat_demand_ending", "carbon_ending", "days_to_starting", "days_to_ending",
|
||||
'number_habitable_rooms_starting', 'number_habitable_rooms_ending', 'number_heated_rooms_starting', 'number_heated_rooms_ending',
|
||||
'number_habitable_rooms', 'number_heated_rooms']
|
||||
retain_features: null
|
||||
# retain_features: ['uprn', 'sap_starting', 'hot_water_energy_eff_ending',
|
||||
# 'mainheat_energy_eff_ending', 'constituency', 'roof_energy_eff_ending',
|
||||
# 'walls_energy_eff_ending', 'secondheat_description_ending',
|
||||
# 'property_type', 'mainheatc_energy_eff_ending', 'built_form',
|
||||
# 'walls_insulation_thickness_ending', 'potential_energy_efficiency',
|
||||
# 'transaction_type_ending',
|
||||
# 'floor_thermal_transmittance_ending',
|
||||
# 'low_energy_lighting_ending', 'heat_demand_starting',
|
||||
# 'photo_supply_ending', 'carbon_starting',
|
||||
# 'walls_thermal_transmittance_ending',
|
||||
# 'roof_insulation_thickness_ending',
|
||||
# 'total_floor_area_ending', 'number_open_fireplaces_ending',
|
||||
# 'windows_energy_eff_ending',
|
||||
# 'floor_height_ending',
|
||||
# 'extension_count_ending',
|
||||
# 'has_air_source_heat_pump_ending',
|
||||
# 'charging_system_ending', 'construction_age_band', 'glazed_type_ending',
|
||||
# 'roof_thermal_transmittance_ending',
|
||||
# 'floor_insulation_thickness_ending', 'has_mains_gas_ending',
|
||||
# 'estimated_perimeter_starting', 'energy_consumption_potential',
|
||||
# 'environment_impact_potential', 'heater_type_ending',
|
||||
# 'multi_glaze_proportion_ending',
|
||||
# 'lighting_energy_eff_ending', 'fixed_lighting_outlets_count']
|
||||
|
||||
generate_predictions:
|
||||
input_dataclient_type: local
|
||||
output_dataclient_type: local
|
||||
test_data_filepath: ./data/prepared_data/test.parquet
|
||||
predictions_output_filepath: ./data/predictions/predictions.parquet
|
||||
predictions_column_name: predictions
|
||||
identifier_column: id
|
||||
|
||||
generate_metrics:
|
||||
dataclient_type: local
|
||||
metrics_type: Regression
|
||||
metrics_output_filepath: ./metrics/metrics.json
|
||||
|
||||
dev:
|
||||
generate_predictions:
|
||||
input_dataclient_type: aws-s3
|
||||
|
|
@ -0,0 +1,2 @@
|
|||
artefacts: ./data
|
||||
metrics: ./metrics
|
||||
|
|
@ -142,15 +142,9 @@ class AWSS3Client:
|
|||
buffer = BytesIO()
|
||||
obj.to_parquet(buffer, index=False)
|
||||
|
||||
# Reset the buffer position to the beginning
|
||||
buffer.seek(0)
|
||||
|
||||
bucket, key = location.strip("s3://").split("/", 1)
|
||||
self.client.upload_fileobj(buffer, bucket, key)
|
||||
|
||||
# Close the buffer
|
||||
buffer.close()
|
||||
|
||||
def _load_parquet(self, location: str, load_config: dict) -> pd.DataFrame:
|
||||
"""
|
||||
Load a parquet file
|
||||
|
|
@ -245,8 +239,7 @@ class LocalClient:
|
|||
|
||||
save_methods = {
|
||||
".parquet": self._save_parquet,
|
||||
".json": self._save_json,
|
||||
".md": self._save_md,
|
||||
".json": self._save_json
|
||||
# "": _save_directory(**save_config),
|
||||
# ADD MORE save_methods HERE
|
||||
}
|
||||
|
|
@ -295,10 +288,3 @@ class LocalClient:
|
|||
# Write the contents of the buffer to the local file
|
||||
with open(location, "wb") as f:
|
||||
f.write(buffer.getvalue())
|
||||
|
||||
def _save_md(self, obj: pd.DataFrame, location: str, save_config: dict):
|
||||
"""
|
||||
Save object as markdown
|
||||
"""
|
||||
|
||||
obj.to_markdown(location, **save_config)
|
||||
|
|
|
|||
|
|
@ -109,9 +109,7 @@ class DataFrameFeatureProcessor:
|
|||
|
||||
# TODO: to test
|
||||
for key, value in new_feature_funcs.items():
|
||||
key_column = value(df)
|
||||
key_column.name = key
|
||||
df = pd.concat([df, key_column], axis=1)
|
||||
df[key] = value(df)
|
||||
|
||||
return df
|
||||
|
||||
|
|
|
|||
|
|
@ -21,7 +21,6 @@ def setup_logger():
|
|||
|
||||
# Add the stream handler to the logger
|
||||
logger.addHandler(stream_handler)
|
||||
logger.propagate = False
|
||||
|
||||
return logger
|
||||
|
||||
|
|
|
|||
|
|
@ -4,7 +4,6 @@ Implementation of MLMetrics, all of which will have two methods:
|
|||
- Generate Plot Suite
|
||||
"""
|
||||
|
||||
import numpy as np
|
||||
import pandas as pd
|
||||
from typing import Union
|
||||
from sklearn.metrics import (
|
||||
|
|
@ -15,18 +14,6 @@ from sklearn.metrics import (
|
|||
)
|
||||
from core.interface.InterfaceMetrics import MLMetrics
|
||||
|
||||
# Define the function to return the SMAPE value
|
||||
def symmetric_mape(actual, predicted) -> float:
|
||||
|
||||
# Convert actual and predicted to numpy
|
||||
# array data type if not already
|
||||
if not all([isinstance(actual, np.ndarray), isinstance(predicted, np.ndarray)]):
|
||||
actual, predicted = np.array(actual), np.array(predicted)
|
||||
|
||||
return np.mean(
|
||||
np.abs(predicted - actual) / ((np.abs(predicted) + np.abs(actual)) / 2)
|
||||
)
|
||||
|
||||
|
||||
def metrics_factory(metrics_type: str) -> MLMetrics:
|
||||
metrics = {
|
||||
|
|
@ -47,7 +34,7 @@ class RegressionMetrics:
|
|||
median_absolute_error,
|
||||
mean_squared_error,
|
||||
mean_absolute_percentage_error,
|
||||
symmetric_mape,
|
||||
# max_error
|
||||
]
|
||||
|
||||
def generate_metrics(
|
||||
|
|
|
|||
|
|
@ -25,7 +25,7 @@ def model_factory(model_type: str) -> MLModel:
|
|||
models = {
|
||||
"SKLearnLinearRegression": SKLearnLinearRegression(),
|
||||
"SKLearnSVMRegression": SKLearnSVMRegression(),
|
||||
"AutogluonAutoML": AutogluonAutoML(),
|
||||
"AutogluonAutoML": AutogluonAutoML()
|
||||
# ADD OTHER MODELS HERE
|
||||
}
|
||||
|
||||
|
|
@ -75,9 +75,7 @@ class SKLearnLinearRegression:
|
|||
y_train = data[target]
|
||||
self.model.fit(x_train, y_train)
|
||||
|
||||
def predict(
|
||||
self, data: pd.DataFrame, post_prediction_logic: dict | None = None
|
||||
) -> pd.Series:
|
||||
def predict(self, data: pd.DataFrame) -> pd.Series:
|
||||
"""
|
||||
Method to predict
|
||||
"""
|
||||
|
|
@ -130,9 +128,7 @@ class SKLearnSVMRegression:
|
|||
y_train = data[target]
|
||||
self.model.fit(x_train, y_train)
|
||||
|
||||
def predict(
|
||||
self, data: pd.DataFrame, post_prediction_logic: dict | None = None
|
||||
) -> pd.Series:
|
||||
def predict(self, data: pd.DataFrame) -> pd.Series:
|
||||
"""
|
||||
Method to predict
|
||||
"""
|
||||
|
|
@ -149,9 +145,6 @@ class AutogluonAutoML:
|
|||
"time_limit",
|
||||
"presets",
|
||||
"excluded_model_types",
|
||||
"infer_limit",
|
||||
"infer_limit_batch_size",
|
||||
"ag_args_ensemble",
|
||||
]
|
||||
|
||||
def load_model(self, path: Union[Path, str]) -> None:
|
||||
|
|
@ -168,12 +161,8 @@ class AutogluonAutoML:
|
|||
if self.model is None:
|
||||
raise KeyError("No model trained/ loaded - unable to save")
|
||||
|
||||
logger.info(
|
||||
"Using AutoGluon Model - Model saving is using optimised deployment mode"
|
||||
)
|
||||
|
||||
logger.info("Saving optimised model")
|
||||
self.model.clone_for_deployment(str(path))
|
||||
logger.info("In local development mode - no need for s3 client")
|
||||
logger.info("Using AutoGluon Model - Model saving already occured")
|
||||
|
||||
return str(path)
|
||||
|
||||
|
|
@ -206,44 +195,17 @@ class AutogluonAutoML:
|
|||
time_limit=model_hyperparameters["time_limit"],
|
||||
presets=model_hyperparameters["presets"],
|
||||
excluded_model_types=model_hyperparameters["excluded_model_types"],
|
||||
infer_limit=model_hyperparameters["infer_limit"],
|
||||
infer_limit_batch_size=model_hyperparameters["infer_limit_batch_size"],
|
||||
ag_args_ensemble=model_hyperparameters["ag_args_ensemble"],
|
||||
)
|
||||
|
||||
def predict(
|
||||
self, data: pd.DataFrame, post_prediction_logic: dict | None = None
|
||||
) -> pd.Series:
|
||||
def predict(self, data: pd.DataFrame) -> pd.Series:
|
||||
"""
|
||||
Method to predict
|
||||
"""
|
||||
|
||||
if post_prediction_logic is None:
|
||||
post_prediction_logic = {}
|
||||
|
||||
if self.model is None:
|
||||
print("No model loaded/ trained")
|
||||
exit(1)
|
||||
|
||||
predictions = pd.Series(self.model.predict(data))
|
||||
|
||||
if len(post_prediction_logic) != 0:
|
||||
predictions = self._apply_post_prediction_logic(
|
||||
data=data,
|
||||
predictions=predictions,
|
||||
post_prediction_logic=post_prediction_logic,
|
||||
)
|
||||
|
||||
return predictions
|
||||
|
||||
def _apply_post_prediction_logic(
|
||||
self, data: pd.DataFrame, predictions: pd.Series, post_prediction_logic: dict
|
||||
):
|
||||
"""
|
||||
For predictions, we can apply post processing logic to clean up predictions
|
||||
"""
|
||||
|
||||
for _, value in post_prediction_logic.items():
|
||||
predictions = value(data, predictions)
|
||||
|
||||
return predictions
|
||||
|
|
|
|||
|
|
@ -32,9 +32,7 @@ class MLModel(Protocol):
|
|||
"""
|
||||
...
|
||||
|
||||
def predict(
|
||||
self, data: pd.DataFrame, post_prediction_logic: dict | None
|
||||
) -> pd.Series:
|
||||
def predict(self, data: pd.DataFrame) -> pd.Series:
|
||||
"""
|
||||
Method to predict
|
||||
"""
|
||||
|
|
|
|||
3
modules/ml-pipeline/src/pipeline/data/.gitignore
vendored
Normal file
3
modules/ml-pipeline/src/pipeline/data/.gitignore
vendored
Normal file
|
|
@ -0,0 +1,3 @@
|
|||
/prepared_data
|
||||
/model
|
||||
/predictions
|
||||
|
|
@ -1,190 +1,126 @@
|
|||
schema: '2.0'
|
||||
stages:
|
||||
startup_cleanup:
|
||||
cmd: python 0_startup_cleanup.py
|
||||
deps:
|
||||
- path: 0_startup_cleanup.py
|
||||
hash: md5
|
||||
md5: b1b12f6b6393fbf8b83d23684df0a3d4
|
||||
size: 1220
|
||||
params:
|
||||
configs/settings.yaml:
|
||||
default.startup_cleanup.artefacts: ./data
|
||||
default.startup_cleanup.metrics: ./metrics
|
||||
prepare_data:
|
||||
cmd: python 1_prepare_data.py
|
||||
cmd: python prepare_data.py
|
||||
deps:
|
||||
- path: 1_prepare_data.py
|
||||
- path: prepare_data.py
|
||||
hash: md5
|
||||
md5: 11a3b8bfdfe199ab7ecc39ccc5652649
|
||||
size: 4298
|
||||
md5: 2648d7d407dca857a1d20a11a88d3d98
|
||||
size: 5116
|
||||
params:
|
||||
configs/settings.yaml:
|
||||
default.feature_processor.feature_processor_config.drop_columns:
|
||||
- heat_demand_change
|
||||
- carbon_change
|
||||
- rdsap_change
|
||||
- heat_demand_ending
|
||||
- carbon_ending
|
||||
- days_to_starting
|
||||
- days_to_ending
|
||||
- number_habitable_rooms_starting
|
||||
- number_habitable_rooms_ending
|
||||
- number_heated_rooms_starting
|
||||
- number_heated_rooms_ending
|
||||
- number_habitable_rooms
|
||||
- number_heated_rooms
|
||||
default.feature_processor.feature_processor_config.retain_features:
|
||||
default.feature_processor.feature_processor_config.subsample_amount:
|
||||
default.feature_processor.feature_processor_config.subsample_seed: 0
|
||||
default.feature_processor.feature_processor_config.target: sap_ending
|
||||
default.feature_processor.feature_processor_type: dataframe
|
||||
default.prepare_data.data_filepath:
|
||||
s3://retrofit-data-dev/sap_change_model/2024-05-28-19-08-25/dataset_rooms.parquet
|
||||
default.prepare_data.input_dataclient_type: aws-s3
|
||||
default.prepare_data.output_dataclient_type: local
|
||||
default.prepare_data.output_test_filepath: ./data/prepared_data/test.parquet
|
||||
default.prepare_data.output_train_filepath: ./data/prepared_data/train.parquet
|
||||
default.prepare_data.train_proportion: 0.9
|
||||
configs/prepare_data.yaml:
|
||||
output_test_filepath: ./data/prepared_data/test.parquet
|
||||
output_train_filepath: ./data/prepared_data/train.parquet
|
||||
train_proportion: 0.9
|
||||
outs:
|
||||
- path: data/prepared_data/
|
||||
hash: md5
|
||||
md5: 80c9e138146a1d96b9d16091c207e2e8.dir
|
||||
size: 45056059
|
||||
md5: c183712d22ab739e0be016724f44ee1c.dir
|
||||
size: 12203729
|
||||
nfiles: 2
|
||||
build_model:
|
||||
cmd: python 2_build_model.py
|
||||
cmd: python build_model.py
|
||||
deps:
|
||||
- path: 2_build_model.py
|
||||
- path: build_model.py
|
||||
hash: md5
|
||||
md5: 7231450b78920b0c5e7c6bada496b24a
|
||||
size: 4820
|
||||
md5: f9fa2a66d908b42ae196ce6f0f782258
|
||||
size: 5134
|
||||
- path: data/prepared_data
|
||||
hash: md5
|
||||
md5: 80c9e138146a1d96b9d16091c207e2e8.dir
|
||||
size: 45056059
|
||||
md5: c183712d22ab739e0be016724f44ee1c.dir
|
||||
size: 12203729
|
||||
nfiles: 2
|
||||
params:
|
||||
configs/build_model.yaml:
|
||||
default:
|
||||
build_model:
|
||||
model_type: AutogluonAutoML
|
||||
model_save_filepath: ./data/model/optimised/
|
||||
fit_metrics_filepath: ./metrics/fit_metrics.json
|
||||
fit_predictions_filepath: ./data/fit_predictions/predictions.parquet
|
||||
SKLearnLinearRegression:
|
||||
SKLearnSVMRegression:
|
||||
kernel: linear
|
||||
AutogluonAutoML:
|
||||
output_filepath: ./data/model/allmodels/
|
||||
problem_type: regression
|
||||
eval_metric: mean_squared_error
|
||||
time_limit: 1800
|
||||
presets: medium_quality
|
||||
excluded_model_types:
|
||||
- RF
|
||||
- CAT
|
||||
- NN_TORCH
|
||||
- KNN
|
||||
- XT
|
||||
infer_limit: 0.05
|
||||
infer_limit_batch_size: 10000
|
||||
ag_args_ensemble:
|
||||
num_folds_parallel: 2
|
||||
AutogluonAutoML:
|
||||
output_filepath: ./data/model/autogluonmodel/
|
||||
problem_type: regression
|
||||
eval_metric: mean_absolute_error
|
||||
time_limit: 60
|
||||
presets: medium_quality
|
||||
excluded_model_types:
|
||||
- KNN
|
||||
SKLearnLinearRegression:
|
||||
SKLearnSVMRegression:
|
||||
kernel: linear
|
||||
fit_metrics_filepath: ./metrics/fit_metrics.json
|
||||
model_save_filepath: ./data/model/autogluonmodel/
|
||||
model_type: AutogluonAutoML
|
||||
outs:
|
||||
- path: data/fit_predictions/
|
||||
hash: md5
|
||||
md5: d9c9afc05e8780db47c0548b19bf7d19.dir
|
||||
size: 3349989
|
||||
nfiles: 1
|
||||
- path: data/model/
|
||||
hash: md5
|
||||
md5: 13c3100e1486c27a83a8a47491077842.dir
|
||||
size: 773523079
|
||||
nfiles: 36
|
||||
md5: cb03448b572cb167bf281ee8d43dccd9.dir
|
||||
size: 99423757
|
||||
nfiles: 14
|
||||
- path: metrics/fit_metrics.json
|
||||
hash: md5
|
||||
md5: 2ff70a2a45813e1bcdf2ea3aa8e07d4a
|
||||
size: 224
|
||||
md5: 48d9cc86c22c1ac0da8903a32a7d10c3
|
||||
size: 183
|
||||
generate_predictions:
|
||||
cmd: python 3_generate_predictions.py
|
||||
cmd: python generate_predictions.py
|
||||
deps:
|
||||
- path: 3_generate_predictions.py
|
||||
hash: md5
|
||||
md5: 0a70ad4dfe99414a75d1261c75a177b9
|
||||
size: 2464
|
||||
- path: data/model
|
||||
hash: md5
|
||||
md5: 13c3100e1486c27a83a8a47491077842.dir
|
||||
size: 773523079
|
||||
nfiles: 36
|
||||
md5: cb03448b572cb167bf281ee8d43dccd9.dir
|
||||
size: 99423757
|
||||
nfiles: 14
|
||||
- path: data/prepared_data
|
||||
hash: md5
|
||||
md5: 80c9e138146a1d96b9d16091c207e2e8.dir
|
||||
size: 45056059
|
||||
md5: c183712d22ab739e0be016724f44ee1c.dir
|
||||
size: 12203729
|
||||
nfiles: 2
|
||||
- path: generate_predictions.py
|
||||
hash: md5
|
||||
md5: a25c4611ff467cdc1c921918112a30fe
|
||||
size: 4311
|
||||
params:
|
||||
configs/settings.yaml:
|
||||
default.generate_predictions.input_dataclient_type: local
|
||||
default.generate_predictions.output_dataclient_type: local
|
||||
default.generate_predictions.predictions_column_name: predictions
|
||||
default.generate_predictions.predictions_output_filepath: ./data/predictions/predictions.parquet
|
||||
default.generate_predictions.test_data_filepath: ./data/prepared_data/test.parquet
|
||||
configs/generate_predictions.yaml:
|
||||
input_dataclient_type: local
|
||||
output_dataclient_type: local
|
||||
predictions_column_name: predictions
|
||||
predictions_output_filepath: ./data/predictions/predictions.parquet
|
||||
test_data_filepath: ./data/prepared_data/test.parquet
|
||||
outs:
|
||||
- path: data/predictions/
|
||||
hash: md5
|
||||
md5: 5d07bcebf3160a72bb18dfd79106e85c.dir
|
||||
size: 463197
|
||||
md5: 3d5002f0eecd2374a0ef2fd6f711503e.dir
|
||||
size: 383878
|
||||
nfiles: 1
|
||||
generate_metrics:
|
||||
cmd: python 4_generate_metrics.py
|
||||
cmd: python generate_metrics.py
|
||||
deps:
|
||||
- path: 4_generate_metrics.py
|
||||
hash: md5
|
||||
md5: 4fedb86d89d528f0a6597934ba3890a0
|
||||
size: 3484
|
||||
- path: data/predictions
|
||||
hash: md5
|
||||
md5: 5d07bcebf3160a72bb18dfd79106e85c.dir
|
||||
size: 463197
|
||||
md5: 3d5002f0eecd2374a0ef2fd6f711503e.dir
|
||||
size: 383878
|
||||
nfiles: 1
|
||||
- path: data/prepared_data
|
||||
hash: md5
|
||||
md5: 80c9e138146a1d96b9d16091c207e2e8.dir
|
||||
size: 45056059
|
||||
md5: c183712d22ab739e0be016724f44ee1c.dir
|
||||
size: 12203729
|
||||
nfiles: 2
|
||||
- path: generate_metrics.py
|
||||
hash: md5
|
||||
md5: 8ce0b6b55e1688fca816985e0cf37f28
|
||||
size: 4220
|
||||
params:
|
||||
configs/settings.yaml:
|
||||
default.generate_metrics.dataclient_type: local
|
||||
default.generate_metrics.metrics_output_filepath: ./metrics/metrics.json
|
||||
default.generate_metrics.metrics_type: Regression
|
||||
configs/generate_metrics.yaml:
|
||||
dataclient_type: local
|
||||
metrics_output_filepath: ./metrics/metrics.json
|
||||
metrics_type: Regression
|
||||
outs:
|
||||
- path: metrics/metrics.json
|
||||
hash: md5
|
||||
md5: 3e08df02fd5c5d094bcf936e1338d596
|
||||
size: 223
|
||||
generate_scenerio_metrics:
|
||||
cmd: python 5_generate_scenarios.py
|
||||
md5: 08a81d2e5cecf360043498526bc98314
|
||||
size: 183
|
||||
startup_cleanup:
|
||||
cmd: python startup_cleanup.py
|
||||
deps:
|
||||
- path: 5_generate_scenarios.py
|
||||
- path: startup_cleanup.py
|
||||
hash: md5
|
||||
md5: 40506749fefd926d47c60ff5b16db307
|
||||
size: 5337
|
||||
md5: 2e51fbcac960d0f960bf32a8ec7486a0
|
||||
size: 1748
|
||||
params:
|
||||
configs/scenarios.yaml:
|
||||
default.scenarios:
|
||||
input_dataclient_type: aws-s3
|
||||
output_dataclient_type: local
|
||||
scenario_data_filepaths:
|
||||
- s3://retrofit-data-dev/scenario_data/28-05-2024-19-22-41/recommendations_scoring_data.parquet
|
||||
comparison_output_filepath: ./metrics/scenario_table.md
|
||||
metrics_output_filepath: ./metrics/scenario_metrics.md
|
||||
outs:
|
||||
- path: metrics/scenario_metrics.md
|
||||
hash: md5
|
||||
md5: fa4d6d7bbd7818613800da5f8f37ea96
|
||||
size: 363
|
||||
- path: metrics/scenario_table.md
|
||||
hash: md5
|
||||
md5: d6baf100a1623cc2467c2f8221d314c9
|
||||
size: 2133
|
||||
configs/startup_cleanup.yaml:
|
||||
artefacts: ./data
|
||||
metrics: ./metrics
|
||||
|
|
|
|||
|
|
@ -1,87 +1,58 @@
|
|||
stages:
|
||||
startup_cleanup:
|
||||
cmd: python 0_startup_cleanup.py
|
||||
cmd: python startup_cleanup.py
|
||||
deps:
|
||||
- 0_startup_cleanup.py
|
||||
- startup_cleanup.py
|
||||
params:
|
||||
- configs/settings.yaml:
|
||||
- default.startup_cleanup.artefacts
|
||||
- default.startup_cleanup.metrics
|
||||
- configs/startup_cleanup.yaml:
|
||||
- artefacts
|
||||
- metrics
|
||||
always_changed: true
|
||||
prepare_data:
|
||||
cmd: python 1_prepare_data.py
|
||||
cmd: python prepare_data.py
|
||||
deps:
|
||||
- 1_prepare_data.py
|
||||
- prepare_data.py
|
||||
params:
|
||||
- configs/settings.yaml:
|
||||
- default.prepare_data.input_dataclient_type
|
||||
- default.prepare_data.output_dataclient_type
|
||||
- default.prepare_data.data_filepath
|
||||
- default.prepare_data.train_proportion
|
||||
- default.prepare_data.output_train_filepath
|
||||
- default.prepare_data.output_test_filepath
|
||||
- default.feature_processor.feature_processor_type
|
||||
- default.feature_processor.feature_processor_config.subsample_amount
|
||||
- default.feature_processor.feature_processor_config.subsample_seed
|
||||
- default.feature_processor.feature_processor_config.target
|
||||
- default.feature_processor.feature_processor_config.drop_columns
|
||||
- default.feature_processor.feature_processor_config.retain_features
|
||||
- configs/prepare_data.yaml:
|
||||
- output_test_filepath
|
||||
- output_train_filepath
|
||||
- train_proportion
|
||||
outs:
|
||||
- data/prepared_data/
|
||||
always_changed: true
|
||||
build_model:
|
||||
cmd: python 2_build_model.py
|
||||
cmd: python build_model.py
|
||||
deps:
|
||||
- 2_build_model.py
|
||||
- build_model.py
|
||||
- data/prepared_data
|
||||
params:
|
||||
- configs/build_model.yaml:
|
||||
outs:
|
||||
- data/model/
|
||||
- data/fit_predictions/
|
||||
- metrics/fit_metrics.json
|
||||
always_changed: true
|
||||
generate_predictions:
|
||||
cmd: python 3_generate_predictions.py
|
||||
cmd: python generate_predictions.py
|
||||
deps:
|
||||
- 3_generate_predictions.py
|
||||
- generate_predictions.py
|
||||
- data/prepared_data
|
||||
- data/model
|
||||
params:
|
||||
- configs/settings.yaml:
|
||||
- default.generate_predictions.input_dataclient_type
|
||||
- default.generate_predictions.output_dataclient_type
|
||||
- default.generate_predictions.test_data_filepath
|
||||
- default.generate_predictions.predictions_output_filepath
|
||||
- default.generate_predictions.predictions_column_name
|
||||
- configs/generate_predictions.yaml:
|
||||
outs:
|
||||
- data/predictions/
|
||||
always_changed: true
|
||||
generate_metrics:
|
||||
cmd: python 4_generate_metrics.py
|
||||
cmd: python generate_metrics.py
|
||||
deps:
|
||||
- 4_generate_metrics.py
|
||||
- generate_metrics.py
|
||||
- data/prepared_data
|
||||
- data/predictions
|
||||
params:
|
||||
- configs/settings.yaml:
|
||||
- default.generate_metrics.dataclient_type
|
||||
- default.generate_metrics.metrics_type
|
||||
- default.generate_metrics.metrics_output_filepath
|
||||
- configs/generate_metrics.yaml:
|
||||
outs:
|
||||
- metrics/metrics.json
|
||||
always_changed: true
|
||||
generate_scenerio_metrics:
|
||||
cmd: python 5_generate_scenarios.py
|
||||
deps:
|
||||
- 5_generate_scenarios.py
|
||||
params:
|
||||
- configs/scenarios.yaml:
|
||||
- default.scenarios
|
||||
outs:
|
||||
- metrics/scenario_table.md
|
||||
- metrics/scenario_metrics.md
|
||||
always_changed: true
|
||||
metrics:
|
||||
- metrics/metrics.json
|
||||
- metrics/fit_metrics.json
|
||||
|
|
|
|||
|
|
@ -175,74 +175,3 @@ plot_permutation_importance(exp, fig_kw={"figwidth": 7, "figheight": 6})
|
|||
# Use shap package to explain why 9158 has a 35 prediction when its sap ending is 96
|
||||
#
|
||||
#
|
||||
|
||||
from core.MLModels import model_factory
|
||||
from core.DataClient import dataclient_factory
|
||||
import pandas as pd
|
||||
from config import settings
|
||||
|
||||
client_params = settings.client
|
||||
prepare_data_params = settings.prepare_data
|
||||
feature_process_params = settings.feature_processor
|
||||
build_model_params = settings.build_model
|
||||
generate_predictions_params = settings.generate_predictions
|
||||
prediction_analysis_params = settings.prediction_analysis
|
||||
model = model_factory(build_model_params["model_type"])
|
||||
model.load_model(build_model_params["model_save_filepath"])
|
||||
dataclient_type = prediction_analysis_params["dataclient_type"]
|
||||
# dataclient_type = 'aws-s3'
|
||||
# dataclient = dataclient_factory(
|
||||
# dataclient_type=dataclient_type,
|
||||
# dataclient_config=client_params[dataclient_type],
|
||||
# )
|
||||
# data = dataclient.load_data("s3://retrofit-data-dev/sap_change_model/dataset.parquet")
|
||||
|
||||
target = feature_process_params["feature_processor_config"]["target"]
|
||||
predictions_column_name = generate_predictions_params["predictions_column_name"]
|
||||
output_test_filepath = prepare_data_params["output_test_filepath"]
|
||||
predictions_output_filepath = generate_predictions_params["predictions_output_filepath"]
|
||||
|
||||
# score_data = dataclient.load_data("s3://retrofit-data-dev/carbon_change_predictions/51/2023-11-28T21:01:21.869339.parquet")
|
||||
|
||||
|
||||
local_dataclient = dataclient_factory(
|
||||
dataclient_type="local",
|
||||
dataclient_config=client_params["local"],
|
||||
)
|
||||
test_df = local_dataclient.load_data(output_test_filepath)
|
||||
predictions = local_dataclient.load_data(predictions_output_filepath)
|
||||
mix_df = pd.concat([test_df.copy(), predictions], axis=1)
|
||||
mix_df["residual"] = abs(mix_df[predictions_column_name] - mix_df[target])
|
||||
mix_df = mix_df.sort_values("residual", ascending=False)
|
||||
|
||||
cosine_similarity_df = mix_df[mix_df.columns.difference(["predictions", "residual"])]
|
||||
from sklearn.metrics.pairwise import cosine_similarity
|
||||
|
||||
row_index = 0
|
||||
|
||||
from sklearn.preprocessing import LabelEncoder
|
||||
|
||||
object_columns = cosine_similarity_df.select_dtypes(["object"])
|
||||
|
||||
cosine_similarity_df[object_columns.columns] = cosine_similarity_df[
|
||||
object_columns.columns
|
||||
].apply(LabelEncoder().fit_transform)
|
||||
|
||||
feature_vector = cosine_similarity_df.loc[[row_index]]
|
||||
|
||||
cosine_similarity_df["cosine"] = cosine_similarity(cosine_similarity_df, feature_vector)
|
||||
similar_index = (
|
||||
cosine_similarity_df.sort_values("cosine", ascending=False).head(15).index
|
||||
)
|
||||
|
||||
check_df = mix_df.loc[similar_index]
|
||||
|
||||
columns_to_check = [
|
||||
"LOW_ENERGY_LIGHTING_ENDING",
|
||||
"walls_thermal_transmittance_ENDING",
|
||||
"floor_thermal_transmittance_ENDING",
|
||||
"roof_thermal_transmittance_ENDING",
|
||||
"roof_insulation_thickness_ENDING",
|
||||
]
|
||||
|
||||
cosine_similarity_df = mix_df[columns_to_check]
|
||||
|
|
|
|||
124
modules/ml-pipeline/src/pipeline/generate_metrics.py
Normal file
124
modules/ml-pipeline/src/pipeline/generate_metrics.py
Normal file
|
|
@ -0,0 +1,124 @@
|
|||
"""
|
||||
Third part of the pipeline:
|
||||
After the model is built, we can evaluate its performance
|
||||
"""
|
||||
|
||||
import os
|
||||
import yaml
|
||||
import pandas as pd
|
||||
from pathlib import Path
|
||||
from core.interface.InterfaceModels import MLModel
|
||||
from core.interface.InterfaceMetrics import MLMetrics
|
||||
from core.interface.InterfaceDataClient import DataClient
|
||||
from core.DataClient import dataclient_factory
|
||||
from core.MLModels import model_factory
|
||||
from core.MLMetrics import metrics_factory
|
||||
from core.Logger import logger
|
||||
|
||||
|
||||
RUNTIME_ENVIRONMENT = os.environ.get("RUNTIME_ENVIRONMENT", "local")
|
||||
|
||||
client_path = Path(__file__).parent / "configs" / "client.yaml"
|
||||
client_params = yaml.safe_load(open(client_path))
|
||||
|
||||
prepare_data_path = Path(__file__).parent / "configs" / "prepare_data.yaml"
|
||||
prepare_data_params = yaml.safe_load(open(prepare_data_path))
|
||||
|
||||
build_model_path = Path(__file__).parent / "configs" / "build_model.yaml"
|
||||
build_model_params = yaml.safe_load(open(build_model_path))
|
||||
|
||||
generate_predictions_path = (
|
||||
Path(__file__).parent / "configs" / "generate_predictions.yaml"
|
||||
)
|
||||
generate_predictions_params = yaml.safe_load(open(generate_predictions_path))
|
||||
|
||||
generate_metrics_path = Path(__file__).parent / "configs" / "generate_metrics.yaml"
|
||||
generate_metrics_params = yaml.safe_load(open(generate_metrics_path))
|
||||
|
||||
feature_process_path = Path(__file__).parent / "configs" / "feature_processor.yaml"
|
||||
feature_process_params = yaml.safe_load(open(feature_process_path))
|
||||
|
||||
|
||||
def generate_metrics(
|
||||
input_dataclient: DataClient,
|
||||
output_dataclient: DataClient,
|
||||
model: MLModel,
|
||||
metrics: MLMetrics,
|
||||
target: str,
|
||||
test_data_filepath: str,
|
||||
predictions_output_filepath: str,
|
||||
predictions_column_name: str,
|
||||
metrics_output_filepath: str,
|
||||
):
|
||||
"""
|
||||
For a given model, we generate prediction and evaluate this against the true target
|
||||
"""
|
||||
|
||||
logger.info("-------------------------")
|
||||
logger.info("--- Loading test data ---")
|
||||
logger.info("-------------------------")
|
||||
|
||||
test_data = input_dataclient.load_data(
|
||||
location=test_data_filepath, load_config=None
|
||||
)
|
||||
|
||||
logger.info("---------------------------")
|
||||
logger.info("--- Loading predictions ---")
|
||||
logger.info("---------------------------")
|
||||
|
||||
predictions = input_dataclient.load_data(
|
||||
location=predictions_output_filepath, load_config=None
|
||||
)
|
||||
|
||||
logger.info("--------------------------")
|
||||
logger.info("--- Generating metrics ---")
|
||||
logger.info("--------------------------")
|
||||
|
||||
metrics_output = metrics.generate_metrics(
|
||||
target=test_data[target],
|
||||
predictions=pd.Series(predictions[predictions_column_name]),
|
||||
)
|
||||
|
||||
logger.info("----------------------")
|
||||
logger.info("--- Saving metrics ---")
|
||||
logger.info("----------------------")
|
||||
|
||||
output_dataclient.save_data(
|
||||
obj=metrics_output, location=metrics_output_filepath, save_config=None
|
||||
)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
|
||||
logger.info("----------------------------")
|
||||
logger.info(f"--- {__file__} - Start! ---")
|
||||
logger.info("----------------------------")
|
||||
|
||||
model = model_factory(build_model_params["model_type"])
|
||||
|
||||
# Use data client for input and output, as we use dvc to cache later to the cloud
|
||||
dataclient_type = generate_metrics_params["dataclient_type"]
|
||||
dataclient = dataclient_factory(
|
||||
dataclient_type=dataclient_type,
|
||||
dataclient_config=client_params[dataclient_type],
|
||||
)
|
||||
|
||||
metrics = metrics_factory(generate_metrics_params["metrics_type"])
|
||||
|
||||
generate_metrics(
|
||||
input_dataclient=dataclient,
|
||||
output_dataclient=dataclient,
|
||||
model=model,
|
||||
metrics=metrics,
|
||||
target=feature_process_params["feature_processor_config"]["target"],
|
||||
test_data_filepath=generate_predictions_params["test_data_filepath"],
|
||||
predictions_output_filepath=generate_predictions_params[
|
||||
"predictions_output_filepath"
|
||||
],
|
||||
predictions_column_name=generate_predictions_params["predictions_column_name"],
|
||||
metrics_output_filepath=generate_metrics_params["metrics_output_filepath"],
|
||||
)
|
||||
|
||||
logger.info("-------------------------------")
|
||||
logger.info(f"--- {__file__} - Complete! ---")
|
||||
logger.info("-------------------------------")
|
||||
|
|
@ -1,10 +1,39 @@
|
|||
"""
|
||||
Third part of the pipeline:
|
||||
After the model is built, we can evaluate its performance
|
||||
"""
|
||||
|
||||
import os
|
||||
import yaml
|
||||
import pandas as pd
|
||||
from configs.post_prediction_logic import post_prediction_logic
|
||||
from pathlib import Path
|
||||
from core.interface.InterfaceModels import MLModel
|
||||
from core.interface.InterfaceDataClient import DataClient
|
||||
from core.DataClient import dataclient_factory
|
||||
from core.MLModels import model_factory
|
||||
from core.Logger import logger
|
||||
|
||||
|
||||
RUNTIME_ENVIRONMENT = os.environ.get("RUNTIME_ENVIRONMENT", "local")
|
||||
|
||||
client_path = Path(__file__).parent / "configs" / "client.yaml"
|
||||
client_params = yaml.safe_load(open(client_path))
|
||||
|
||||
prepare_data_path = Path(__file__).parent / "configs" / "prepare_data.yaml"
|
||||
prepare_data_params = yaml.safe_load(open(prepare_data_path))
|
||||
|
||||
build_model_path = Path(__file__).parent / "configs" / "build_model.yaml"
|
||||
build_model_params = yaml.safe_load(open(build_model_path))
|
||||
|
||||
generate_predictions_path = (
|
||||
Path(__file__).parent / "configs" / "generate_predictions.yaml"
|
||||
)
|
||||
generate_predictions_params = yaml.safe_load(open(generate_predictions_path))
|
||||
|
||||
feature_process_path = Path(__file__).parent / "configs" / "feature_processor.yaml"
|
||||
feature_process_params = yaml.safe_load(open(feature_process_path))
|
||||
|
||||
|
||||
def generate_predictions(
|
||||
input_dataclient: DataClient,
|
||||
output_dataclient: DataClient,
|
||||
|
|
@ -14,43 +43,83 @@ def generate_predictions(
|
|||
test_data_filepath: str,
|
||||
predictions_output_filepath: str,
|
||||
predictions_column_name: str,
|
||||
identifier_column: str = "id",
|
||||
):
|
||||
"""
|
||||
For a given model, we generate prediction and evaluate this against the true target
|
||||
"""
|
||||
|
||||
logger.info("-------------------------")
|
||||
logger.info("--- Loading test data ---")
|
||||
logger.info("-------------------------")
|
||||
|
||||
test_data = input_dataclient.load_data(
|
||||
location=test_data_filepath, load_config=None
|
||||
)
|
||||
|
||||
logger.info("---------------------")
|
||||
logger.info("--- Loading model ---")
|
||||
logger.info("---------------------")
|
||||
|
||||
model.load_model(model_filepath)
|
||||
|
||||
logger.info("------------------------------")
|
||||
logger.info("--- Generating predictions ---")
|
||||
logger.info("------------------------------")
|
||||
|
||||
prediction_data = (
|
||||
test_data.drop(columns=target) if target in test_data.columns else test_data
|
||||
)
|
||||
|
||||
predictions = model.predict(
|
||||
data=prediction_data, post_prediction_logic=post_prediction_logic
|
||||
)
|
||||
predictions = model.predict(data=prediction_data)
|
||||
|
||||
logger.info("--------------------------")
|
||||
logger.info("--- Saving predictions ---")
|
||||
logger.info("--------------------------")
|
||||
|
||||
predictions_df = pd.DataFrame(predictions)
|
||||
predictions_df.columns = [predictions_column_name]
|
||||
|
||||
output_df = (
|
||||
pd.concat([test_data[identifier_column], predictions_df], axis=1)
|
||||
if identifier_column in test_data.columns
|
||||
else predictions_df
|
||||
output_dataclient.save_data(
|
||||
obj=predictions_df, location=predictions_output_filepath, save_config=None
|
||||
)
|
||||
|
||||
output_dataclient.save_data(
|
||||
obj=output_df, location=predictions_output_filepath, save_config=None
|
||||
|
||||
if __name__ == "__main__":
|
||||
|
||||
logger.info("----------------------------")
|
||||
logger.info(f"--- {__file__} - Start! ---")
|
||||
logger.info("----------------------------")
|
||||
|
||||
model = model_factory(build_model_params["model_type"])
|
||||
# We may have different locations of loading hence why we use one specified in generate_predictions.yaml
|
||||
# I.e. for metric runs, this will be a local data client
|
||||
# For predictions, we will want a cloud data client
|
||||
|
||||
input_dataclient_type = generate_predictions_params["input_dataclient_type"]
|
||||
input_dataclient = dataclient_factory(
|
||||
dataclient_type=input_dataclient_type,
|
||||
dataclient_config=client_params[input_dataclient_type],
|
||||
)
|
||||
|
||||
output_dataclient_type = generate_predictions_params["output_dataclient_type"]
|
||||
output_dataclient = dataclient_factory(
|
||||
dataclient_type=output_dataclient_type,
|
||||
dataclient_config=client_params[output_dataclient_type],
|
||||
)
|
||||
|
||||
generate_predictions(
|
||||
input_dataclient=input_dataclient,
|
||||
output_dataclient=output_dataclient,
|
||||
model=model,
|
||||
target=feature_process_params["feature_processor_config"]["target"],
|
||||
model_filepath=build_model_params["model_save_filepath"],
|
||||
test_data_filepath=generate_predictions_params["test_data_filepath"],
|
||||
predictions_output_filepath=generate_predictions_params[
|
||||
"predictions_output_filepath"
|
||||
],
|
||||
predictions_column_name=generate_predictions_params["predictions_column_name"],
|
||||
)
|
||||
|
||||
logger.info("-------------------------------")
|
||||
logger.info(f"--- {__file__} - Complete! ---")
|
||||
logger.info("-------------------------------")
|
||||
|
|
|
|||
|
|
@ -1,4 +1,2 @@
|
|||
/fit_metrics.json
|
||||
/metrics.json
|
||||
/scenario_table.md
|
||||
/scenario_metrics.md
|
||||
|
|
|
|||
|
|
@ -3,6 +3,8 @@ Post Model generation step:
|
|||
We want to look at feature analysis of the model
|
||||
"""
|
||||
|
||||
import yaml
|
||||
from pathlib import Path
|
||||
from core.interface.InterfaceModels import MLModel
|
||||
from core.interface.InterfaceDataClient import DataClient
|
||||
from core.Logger import logger
|
||||
|
|
@ -11,16 +13,27 @@ from core.DataClient import dataclient_factory
|
|||
from alibi.explainers import PermutationImportance, plot_permutation_importance
|
||||
import numpy as np
|
||||
import pandas as pd
|
||||
from config import settings
|
||||
|
||||
|
||||
client_params = settings.client
|
||||
prepare_data_params = settings.prepare_data
|
||||
feature_process_params = settings.feature_processor
|
||||
build_model_params = settings.build_model
|
||||
generate_predictions_params = settings.generate_predictions
|
||||
client_path = Path(__file__).parent / "configs" / "client.yaml"
|
||||
client_params = yaml.safe_load(open(client_path))
|
||||
|
||||
model_analysis_params = settings.model_analysis
|
||||
prepare_data_path = Path(__file__).parent / "configs" / "prepare_data.yaml"
|
||||
prepare_data_params = yaml.safe_load(open(prepare_data_path))
|
||||
|
||||
feature_process_path = Path(__file__).parent / "configs" / "feature_processor.yaml"
|
||||
feature_process_params = yaml.safe_load(open(feature_process_path))
|
||||
|
||||
build_model_path = Path(__file__).parent / "configs" / "build_model.yaml"
|
||||
build_model_params = yaml.safe_load(open(build_model_path))
|
||||
|
||||
model_analysis_path = Path(__file__).parent / "configs" / "model_analysis.yaml"
|
||||
model_analysis_params = yaml.safe_load(open(model_analysis_path))
|
||||
|
||||
generate_predictions_path = (
|
||||
Path(__file__).parent / "configs" / "generate_predictions.yaml"
|
||||
)
|
||||
generate_predictions_params = yaml.safe_load(open(generate_predictions_path))
|
||||
|
||||
model = model_factory(build_model_params["model_type"])
|
||||
model.load_model(build_model_params["model_save_filepath"])
|
||||
|
|
|
|||
|
|
@ -12,21 +12,34 @@ import shap
|
|||
|
||||
shap.initjs()
|
||||
|
||||
from typing import List
|
||||
|
||||
import yaml
|
||||
from pathlib import Path
|
||||
from core.interface.InterfaceModels import MLModel
|
||||
from core.interface.InterfaceDataClient import DataClient
|
||||
from core.Logger import logger
|
||||
from core.MLModels import model_factory
|
||||
from core.DataClient import dataclient_factory
|
||||
import numpy as np
|
||||
import pandas as pd
|
||||
from config import settings
|
||||
|
||||
client_params = settings.client
|
||||
prepare_data_params = settings.prepare_data
|
||||
feature_process_params = settings.feature_processor
|
||||
build_model_params = settings.build_model
|
||||
generate_predictions_params = settings.generate_predictions
|
||||
prediction_analysis_params = settings.prediction_analysis
|
||||
|
||||
client_path = Path(__file__).parent / "configs" / "client.yaml"
|
||||
client_params = yaml.safe_load(open(client_path))
|
||||
|
||||
prepare_data_path = Path(__file__).parent / "configs" / "prepare_data.yaml"
|
||||
prepare_data_params = yaml.safe_load(open(prepare_data_path))
|
||||
|
||||
feature_process_path = Path(__file__).parent / "configs" / "feature_processor.yaml"
|
||||
feature_process_params = yaml.safe_load(open(feature_process_path))
|
||||
|
||||
build_model_path = Path(__file__).parent / "configs" / "build_model.yaml"
|
||||
build_model_params = yaml.safe_load(open(build_model_path))
|
||||
|
||||
prediction_analysis_path = (
|
||||
Path(__file__).parent / "configs" / "prediction_analysis.yaml"
|
||||
)
|
||||
prediction_analysis_params = yaml.safe_load(open(prediction_analysis_path))
|
||||
|
||||
model = model_factory(build_model_params["model_type"])
|
||||
model.load_model(build_model_params["model_save_filepath"])
|
||||
|
|
@ -37,40 +50,22 @@ dataclient = dataclient_factory(
|
|||
dataclient_config=client_params[dataclient_type],
|
||||
)
|
||||
|
||||
target = feature_process_params["feature_processor_config"]["target"]
|
||||
predictions_column_name = generate_predictions_params["predictions_column_name"]
|
||||
|
||||
output_test_filepath = prepare_data_params["output_test_filepath"]
|
||||
|
||||
predictions_output_filepath = generate_predictions_params["predictions_output_filepath"]
|
||||
|
||||
nshap_samples = prediction_analysis_params["nshap_samples"]
|
||||
row_index = prediction_analysis_params["row_index"]
|
||||
|
||||
|
||||
def prediction_analysis(
|
||||
model: MLModel,
|
||||
dataclient: DataClient,
|
||||
target: str,
|
||||
predictions_column_name: str,
|
||||
output_test_filepath: str,
|
||||
predictions_output_filepath: str,
|
||||
nshap_samples: int,
|
||||
row_index: List[int],
|
||||
model: MLModel, dataclient: DataClient, output_test_filepath: str
|
||||
):
|
||||
|
||||
test_df = dataclient.load_data(output_test_filepath)
|
||||
predictions = dataclient.load_data(predictions_output_filepath)
|
||||
|
||||
mix_df = pd.concat([test_df.copy(), predictions], axis=1)
|
||||
mix_df["residual"] = abs(mix_df[predictions_column_name] - mix_df[target])
|
||||
mix_df = mix_df.sort_values("residual", ascending=False)
|
||||
|
||||
target = "SAP_ENDING"
|
||||
test_df_without_target = test_df.drop(columns=[target])
|
||||
|
||||
class ModelWrapper:
|
||||
def __init__(self, model, feature_names):
|
||||
self.model = model
|
||||
# test_df_summary = shap.kmeans(test_df, 10)
|
||||
# print("Baseline feature-values: \n", test_df_summary)
|
||||
class AutogluonWrapper:
|
||||
def __init__(self, predictor, feature_names):
|
||||
self.ag_model = predictor
|
||||
self.feature_names = feature_names
|
||||
|
||||
def predict(self, X):
|
||||
|
|
@ -78,39 +73,27 @@ def prediction_analysis(
|
|||
X = X.values.reshape(1, -1)
|
||||
if not isinstance(X, pd.DataFrame):
|
||||
X = pd.DataFrame(X, columns=self.feature_names)
|
||||
return self.model.predict(X)
|
||||
return self.ag_model.predict(X)
|
||||
|
||||
model_wrapper = ModelWrapper(model, feature_names=test_df_without_target.columns)
|
||||
|
||||
explainer = shap.KernelExplainer(
|
||||
model_wrapper.predict, test_df_without_target.head(100)
|
||||
ag_wrapper = AutogluonWrapper(
|
||||
model.model, feature_names=test_df_without_target.columns
|
||||
)
|
||||
explainer = shap.KernelExplainer(ag_wrapper.predict, test_df_without_target)
|
||||
|
||||
shap_predictions_df = pd.DataFrame(index=test_df_without_target.columns)
|
||||
for index in row_index:
|
||||
single_datapoint = test_df_without_target.iloc[[index]]
|
||||
# single_prediction = model_wrapper.predict(single_datapoint)
|
||||
shap_values_single = explainer.shap_values(
|
||||
single_datapoint, nsamples=nshap_samples
|
||||
)
|
||||
shap.force_plot(
|
||||
explainer.expected_value,
|
||||
shap_values_single,
|
||||
test_df_without_target.iloc[index, :],
|
||||
)
|
||||
shap_single_prediction_df = pd.DataFrame(
|
||||
shap_values_single, columns=test_df_without_target.columns
|
||||
).T
|
||||
shap_single_prediction_df.columns = [index]
|
||||
shap_single_prediction_df = shap_single_prediction_df.sort_values(index)
|
||||
shap_predictions_df = pd.merge(
|
||||
left=shap_predictions_df,
|
||||
right=shap_single_prediction_df,
|
||||
left_index=True,
|
||||
right_index=True,
|
||||
)
|
||||
NSHAP_SAMPLES = 100 # how many samples to use to approximate each Shapely value, larger values will be slower
|
||||
N_VAL = 30 # how many datapoints from validation data should we interpret predictions for, larger values will be slower
|
||||
|
||||
return shap_predictions_df
|
||||
ROW_INDEX = 0 # index of an example datapoint
|
||||
single_datapoint = test_df_without_target.iloc[[ROW_INDEX]]
|
||||
single_prediction = ag_wrapper.predict(single_datapoint)
|
||||
|
||||
shap_values_single = explainer.shap_values(single_datapoint, nsamples=NSHAP_SAMPLES)
|
||||
shap.force_plot(
|
||||
explainer.expected_value,
|
||||
shap_values_single,
|
||||
test_df_without_target.iloc[ROW_INDEX, :],
|
||||
)
|
||||
...
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
|
|
@ -120,13 +103,7 @@ if __name__ == "__main__":
|
|||
logger.info("----------------------------")
|
||||
|
||||
prediction_analysis(
|
||||
model=model,
|
||||
dataclient=dataclient,
|
||||
target=target,
|
||||
predictions_column_name=predictions_column_name,
|
||||
output_test_filepath=output_test_filepath,
|
||||
nshap_samples=nshap_samples,
|
||||
row_index=row_index,
|
||||
model=model, dataclient=dataclient, output_test_filepath=output_test_filepath
|
||||
)
|
||||
|
||||
logger.info("-------------------------------")
|
||||
|
|
|
|||
|
|
@ -15,41 +15,17 @@ from configs.feature_processor_logic import business_logic, new_feature_funcs
|
|||
from core.Logger import logger
|
||||
from core.DataClient import dataclient_factory
|
||||
from core.FeatureProcessor import feature_processor_factory
|
||||
from config import settings
|
||||
|
||||
logger.info(f"--- Initiate Parameters ---")
|
||||
|
||||
RUNTIME_ENVIRONMENT = os.environ.get("RUNTIME_ENVIRONMENT", "local")
|
||||
|
||||
client_params = settings.client
|
||||
prepare_data_params = settings.prepare_data
|
||||
feature_process_params = settings.feature_processor
|
||||
client_path = Path(__file__).parent / "configs" / "client.yaml"
|
||||
client_params = yaml.safe_load(open(client_path))
|
||||
|
||||
data_filepath = prepare_data_params["data_filepath"]
|
||||
train_proportion = prepare_data_params["train_proportion"]
|
||||
output_train_filepath = prepare_data_params["output_train_filepath"]
|
||||
output_test_filepath = prepare_data_params["output_test_filepath"]
|
||||
feature_processor_config = feature_process_params["feature_processor_config"]
|
||||
prepare_data_path = Path(__file__).parent / "configs" / "prepare_data.yaml"
|
||||
prepare_data_params = yaml.safe_load(open(prepare_data_path))
|
||||
|
||||
logger.info(f"--- Initiate DataClient ---")
|
||||
|
||||
input_dataclient_type = prepare_data_params["input_dataclient_type"]
|
||||
output_dataclient_type = prepare_data_params["output_dataclient_type"]
|
||||
|
||||
input_dataclient = dataclient_factory(
|
||||
dataclient_type=input_dataclient_type,
|
||||
dataclient_config=client_params[input_dataclient_type],
|
||||
)
|
||||
output_dataclient = dataclient_factory(
|
||||
dataclient_type=output_dataclient_type,
|
||||
dataclient_config=client_params[output_dataclient_type],
|
||||
)
|
||||
|
||||
logger.info(f"--- Initiate FeatureProcessor ---")
|
||||
|
||||
feature_processor = feature_processor_factory(
|
||||
feature_process_params["feature_processor_type"]
|
||||
)
|
||||
feature_process_path = Path(__file__).parent / "configs" / "feature_processor.yaml"
|
||||
feature_process_params = yaml.safe_load(open(feature_process_path))
|
||||
|
||||
|
||||
def prepare_data(
|
||||
|
|
@ -70,11 +46,15 @@ def prepare_data(
|
|||
:param pipeline_mode: bool, Default False, this caches out the file for experimentation, objects returned in pipeline mode
|
||||
"""
|
||||
|
||||
logger.info("--------------------")
|
||||
logger.info("--- Loading data ---")
|
||||
logger.info("--------------------")
|
||||
|
||||
data = input_dataclient.load_data(location=data_filepath, load_config={})
|
||||
|
||||
logger.info("--------------------------")
|
||||
logger.info("--- Feature Processing ---")
|
||||
logger.info("--------------------------")
|
||||
|
||||
data = feature_processor.feature_process(
|
||||
data,
|
||||
|
|
@ -83,12 +63,13 @@ def prepare_data(
|
|||
new_feature_funcs=new_feature_funcs,
|
||||
)
|
||||
|
||||
logger.info("----------------------")
|
||||
logger.info("--- Splitting data ---")
|
||||
logger.info("----------------------")
|
||||
|
||||
if train_proportion == 1:
|
||||
train = data
|
||||
# Sample 10% of the data for testing
|
||||
test = data.sample(round(len(data) * 0.1))
|
||||
test = None
|
||||
else:
|
||||
train, test = train_test_split(
|
||||
data, train_size=train_proportion, test_size=(1 - train_proportion)
|
||||
|
|
@ -97,7 +78,9 @@ def prepare_data(
|
|||
|
||||
train = train.reset_index(drop=True)
|
||||
|
||||
logger.info("-----------------------")
|
||||
logger.info("--- Outputting data ---")
|
||||
logger.info("-----------------------")
|
||||
|
||||
output_dataclient.save_data(
|
||||
obj=train, location=output_train_filepath, save_config=None
|
||||
|
|
@ -113,21 +96,51 @@ def prepare_data(
|
|||
|
||||
if __name__ == "__main__":
|
||||
|
||||
logger.info("----------------------------")
|
||||
logger.info(f"--- {__file__} - Start! ---")
|
||||
logger.info("----------------------------")
|
||||
|
||||
logger.info("----------------------------")
|
||||
logger.info(f"--- Initiate DataClient ---")
|
||||
logger.info("----------------------------")
|
||||
|
||||
input_dataclient_type = prepare_data_params["input_dataclient_type"]
|
||||
output_dataclient_type = prepare_data_params["output_dataclient_type"]
|
||||
|
||||
input_dataclient = dataclient_factory(
|
||||
dataclient_type=input_dataclient_type,
|
||||
dataclient_config=client_params[input_dataclient_type],
|
||||
)
|
||||
output_dataclient = dataclient_factory(
|
||||
dataclient_type=output_dataclient_type,
|
||||
dataclient_config=client_params[output_dataclient_type],
|
||||
)
|
||||
|
||||
logger.info("----------------------------------")
|
||||
logger.info(f"--- Initiate FeatureProcessor ---")
|
||||
logger.info("----------------------------------")
|
||||
|
||||
feature_processor = feature_processor_factory(
|
||||
feature_process_params["feature_processor_type"]
|
||||
)
|
||||
|
||||
logger.info("---------------------------")
|
||||
logger.info(f"--- Prepare Data Stage ---")
|
||||
logger.info("---------------------------")
|
||||
|
||||
prepare_data(
|
||||
input_dataclient=input_dataclient,
|
||||
output_dataclient=output_dataclient,
|
||||
feature_processor=feature_processor,
|
||||
data_filepath=data_filepath,
|
||||
train_proportion=train_proportion,
|
||||
output_train_filepath=output_train_filepath,
|
||||
output_test_filepath=output_test_filepath,
|
||||
feature_processor_config=feature_processor_config,
|
||||
data_filepath=prepare_data_params["data_filepath"],
|
||||
train_proportion=prepare_data_params["train_proportion"],
|
||||
output_train_filepath=prepare_data_params["output_train_filepath"],
|
||||
output_test_filepath=prepare_data_params["output_test_filepath"],
|
||||
feature_processor_config=feature_process_params["feature_processor_config"],
|
||||
business_logic=business_logic,
|
||||
new_feature_funcs=new_feature_funcs,
|
||||
)
|
||||
|
||||
logger.info("-------------------------------")
|
||||
logger.info(f"--- {__file__} - Complete! ---")
|
||||
logger.info("-------------------------------")
|
||||
|
|
@ -1,7 +1,8 @@
|
|||
joblib==1.3.2
|
||||
boto3==1.28.17
|
||||
pandas==2.1.4
|
||||
autogluon.tabular[all]==1.0.0
|
||||
dynaconf==3.2.1
|
||||
pandas==1.5.3
|
||||
autogluon==0.8.2
|
||||
pyarrow==13.0.0
|
||||
pre-commit==3.3.3
|
||||
sphinx==7.2.5
|
||||
sphinx_rtd_theme==1.3.0
|
||||
|
|
|
|||
|
|
@ -1,7 +1,6 @@
|
|||
joblib==1.3.2
|
||||
boto3==1.28.17
|
||||
pandas==2.1.4
|
||||
autogluon.tabular[all]==1.0.0
|
||||
dynaconf==3.2.1
|
||||
pandas==1.5.3
|
||||
autogluon==0.8.2
|
||||
pyarrow==13.0.0
|
||||
PyYAML==6.0.1
|
||||
|
|
|
|||
|
|
@ -1,10 +1,7 @@
|
|||
joblib==1.3.2
|
||||
boto3==1.28.17
|
||||
pandas==2.1.4
|
||||
autogluon.tabular[all]==1.0.0
|
||||
ray==2.6.3
|
||||
dynaconf==3.2.1
|
||||
alibi==0.9.5
|
||||
shap==0.42.1
|
||||
pandas==1.5.3
|
||||
autogluon==0.8.2
|
||||
alibi==0.9.4
|
||||
pyarrow==13.0.0
|
||||
pre-commit==3.3.3
|
||||
|
|
|
|||
|
|
@ -1,4 +1,3 @@
|
|||
boto3==1.28.41
|
||||
pandas==2.1.4
|
||||
autogluon.tabular[all]==1.0.0
|
||||
dynaconf==3.2.1
|
||||
pandas==1.5.3
|
||||
autogluon==0.8.2
|
||||
|
|
|
|||
|
|
@ -1,4 +1,3 @@
|
|||
dvc==3.51.0
|
||||
dvc-s3==3.2.0
|
||||
gto==1.7.1
|
||||
pyOpenSSL==23.3.0
|
||||
dvc==3.18.0
|
||||
dvc-s3==2.23.0
|
||||
gto==1.0.4
|
||||
|
|
|
|||
|
|
@ -6,9 +6,9 @@ import shutil
|
|||
import yaml
|
||||
from pathlib import Path
|
||||
from core.Logger import logger
|
||||
from config import settings
|
||||
|
||||
startup_cleanup_params = settings.startup_cleanup
|
||||
startup_cleanup_path = Path(__file__).parent / "configs" / "startup_cleanup.yaml"
|
||||
startup_cleanup_params = yaml.safe_load(open(startup_cleanup_path))
|
||||
|
||||
|
||||
def run_cleanup(artefacts_directory: str, metrics_directory: str) -> None:
|
||||
|
|
@ -16,9 +16,13 @@ def run_cleanup(artefacts_directory: str, metrics_directory: str) -> None:
|
|||
Remove the directory where artefacts are stored
|
||||
"""
|
||||
|
||||
logger.info("---------------------")
|
||||
logger.info(f"--- Run Clean up ---")
|
||||
logger.info("---------------------")
|
||||
|
||||
logger.info("-------------------------")
|
||||
logger.info(f"--- Delete artefacts ---")
|
||||
logger.info("-------------------------")
|
||||
|
||||
artefact_directory_path = Path(artefacts_directory)
|
||||
|
||||
|
|
@ -27,7 +31,9 @@ def run_cleanup(artefacts_directory: str, metrics_directory: str) -> None:
|
|||
logger.info(f"Removing the directory: {artefacts_directory}")
|
||||
shutil.rmtree(artefact_directory_path)
|
||||
|
||||
logger.info("-----------------------")
|
||||
logger.info(f"--- Delete metrics ---")
|
||||
logger.info("-----------------------")
|
||||
|
||||
metrics_directory_path = Path(metrics_directory)
|
||||
|
||||
|
|
@ -39,11 +45,15 @@ def run_cleanup(artefacts_directory: str, metrics_directory: str) -> None:
|
|||
|
||||
if __name__ == "__main__":
|
||||
|
||||
logger.info("----------------------------")
|
||||
logger.info(f"--- {__file__} - Start! ---")
|
||||
logger.info("----------------------------")
|
||||
|
||||
run_cleanup(
|
||||
artefacts_directory=startup_cleanup_params["artefacts"],
|
||||
metrics_directory=startup_cleanup_params["metrics"],
|
||||
)
|
||||
|
||||
logger.info("-------------------------------")
|
||||
logger.info(f"--- {__file__} - Complete! ---")
|
||||
logger.info("-------------------------------")
|
||||
Loading…
Add table
Reference in a new issue