added checking for directory before creation and made some minor style changes

This commit is contained in:
Khalim Conn-Kowlessar 2023-08-25 15:21:17 +01:00
parent 4a73ebfb74
commit 81d7e6afb7
7 changed files with 82 additions and 66 deletions

2
.idea/Model.iml generated
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@ -7,7 +7,7 @@
<sourceFolder url="file://$MODULE_DIR$/open_uprn" isTestSource="false" />
<sourceFolder url="file://$MODULE_DIR$/recommendations" isTestSource="false" />
</content>
<orderEntry type="jdk" jdkName="Python 3.10 (backend)" jdkType="Python SDK" />
<orderEntry type="jdk" jdkName="Python 3.10 (simulation_system)" jdkType="Python SDK" />
<orderEntry type="sourceFolder" forTests="false" />
</component>
</module>

2
.idea/misc.xml generated
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@ -1,6 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="ProjectRootManager" version="2" project-jdk-name="Python 3.10 (backend)" project-jdk-type="Python SDK" />
<component name="ProjectRootManager" version="2" project-jdk-name="Python 3.10 (simulation_system)" project-jdk-type="Python SDK" />
<component name="PythonCompatibilityInspectionAdvertiser">
<option name="version" value="3" />
</component>

0
__init__.py Normal file
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@ -1,13 +1,18 @@
import pandas as pd
from core.Logger import logger
import os
class DataLoader():
class DataLoader:
@staticmethod
def load(filepath: str, index_col: str = None) -> pd.DataFrame:
"""
Load different datasets
"""
if not os.path.exists(filepath):
raise FileNotFoundError(f"File not found: {filepath}")
if filepath.endswith('.parquet'):
df = pd.read_parquet(filepath)
if index_col is not None:
@ -15,7 +20,6 @@ class DataLoader():
elif filepath.endswith('.csv'):
df = pd.read_csv(filepath, index_col=index_col)
else:
logger.error('Not implemented!')
exit(1)
raise ValueError(f"File format not supported for file: {filepath}")
return df
return df

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@ -23,6 +23,7 @@ class DataProcessor:
def __init__(self, filepath: Path) -> None:
self.filepath = filepath
self.data = None
def load_data(self, low_memory=False) -> None:
self.data = pd.read_csv(self.filepath, low_memory=low_memory)

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@ -0,0 +1,3 @@
autogluon==0.8.2
pandas==1.5.3
seaborn==0.12.2

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@ -1,16 +1,15 @@
import argparse
# import boto3
import os
import os
from pathlib import Path
from datetime import datetime
from typing import List
from core.Logger import logger
from core.DataLoader import DataLoader
from core.FeatureProcessor import FeatureProcessor
from model_data.simulation_system.core.Logger import logger
from model_data.simulation_system.core.DataLoader import DataLoader
from model_data.simulation_system.core.FeatureProcessor import FeatureProcessor
from MLModel.Models import AutogluonModel
import pandas as pd
from core.Settings import (
from model_data.simulation_system.core.Settings import (
MODEL_DIRECTORY,
BASE_REGISTRY_PATH,
REGISTRY_FILE,
@ -23,7 +22,8 @@ from core.Settings import (
import seaborn as sns
import matplotlib.pyplot as plt
TIMESTAMP = datetime.now().strftime(format="%Y-%m-%d_%H-%M-%S")
TIMESTAMP = datetime.now().strftime("%Y-%m-%d_%H-%M-%S")
# FOR TESTING
# train_filepath = "./model_build_data/change_data/rdsap_full/train_validation_data.parquet"
@ -52,23 +52,27 @@ def ingest_arguments() -> argparse.Namespace:
parser = argparse.ArgumentParser(description='Inputs for training script')
parser.add_argument('--train-filepath', type=str, help='Location of Parquet dataset to load for training', required=True)
parser.add_argument('--test-filepath', type=str, help='Location of Parquet dataset to load for testing', required=True)
parser.add_argument('--model-type', type=str, help='The type of model to train', choices=["autogluon"], default="autogluon")
parser.add_argument('--target-column', type=str, help='The response variable', choices=["RDSAP_CHANGE", "HEAT_DEMAND_CHANGE"], default='RDSAP_CHANGE')
parser.add_argument('--train-filepath', type=str, help='Location of Parquet dataset to load for training',
required=True)
parser.add_argument('--test-filepath', type=str, help='Location of Parquet dataset to load for testing',
required=True)
parser.add_argument('--model-type', type=str, help='The type of model to train', choices=["autogluon"],
default="autogluon")
parser.add_argument('--target-column', type=str, help='The response variable',
choices=["RDSAP_CHANGE", "HEAT_DEMAND_CHANGE"], default='RDSAP_CHANGE')
args = parser.parse_args()
return args
def training(
train_filepath: str,
test_filepath: str,
target_column: str = "RDSAP_CHANGE",
model_type: str = "autogluon",
hyperparameters: dict = None
) -> None:
train_filepath: str,
test_filepath: str,
target_column: str = "RDSAP_CHANGE",
model_type: str = "autogluon",
hyperparameters: dict = None
) -> None:
"""
Pipeline to run training on the dataset
"""
@ -77,12 +81,12 @@ def training(
dataloader = DataLoader()
train_df = dataloader.load(filepath=train_filepath)
test_df = dataloader.load(filepath=test_filepath)
logger.info('--- Feature processing ---')
feature_processor = FeatureProcessor()
subsample_amount = round(len(train_df)/SUBSAMPLE_FACTOR)
subsample_amount = round(len(train_df) / SUBSAMPLE_FACTOR)
train_df = feature_processor.process(train_df, target_column=target_column, subsample_amount=subsample_amount)
test_df = feature_processor.process(test_df, target_column=target_column)
@ -98,65 +102,63 @@ def training(
if model_type == "autogluon":
model_root = f"{target_column}-{hyperparameters['presets']}-{hyperparameters['time_limit']}-{TIMESTAMP}".lower()
output_base = Path(MODEL_DIRECTORY) / target_column / model_type / model_root
output_base = Path(MODEL_DIRECTORY) / target_column / model_type / model_root
model = AutogluonModel(
output_filepath = output_base / MODEL_FOLDER
)
else:
logger.error("No alternative model implemented yet")
exit(1)
model.train_model(
data=train_df,
target_column=target_column,
hyperparameters=hyperparameters
output_filepath=output_base / MODEL_FOLDER
)
else:
raise ValueError("No alternative model implemented yet")
model.train_model(
data=train_df,
target_column=target_column,
hyperparameters=hyperparameters
)
logger.info("--- Save Model ---")
model.save_model(output_filepath=model.output_filepath)
logger.info('--- Generate evaluation metrics ---')
metrics_df = model.model_evaluation(
validation_data=test_df,
validation_data=test_df,
target_column=target_column,
metrics_location = output_base / METRICS_FOLDER
)
metrics_location=output_base / METRICS_FOLDER
)
logger.info("--- Generate metric outputs using predictions ---")
# TODO: can have a model.metric_outputs method
# FOr not just do it here
residual_df = pd.DataFrame(list(zip(test_df[target_column], model.predictions)), columns=['true', 'pred'])
# image formatting
# TODO: move to settings file , AXIS_FONT, TITLE_FONT
axis_fs = 18 #fontsize
title_fs = 22 #fontsize
axis_fs = 18 # fontsize
title_fs = 22 # fontsize
sns.set(style="whitegrid")
ax = sns.scatterplot(x="true", y="pred",data=residual_df)
ax = sns.scatterplot(x="true", y="pred", data=residual_df)
ax.set_aspect('equal')
ax.set_xlabel(f'True {target_column}',fontsize = axis_fs)
ax.set_ylabel(f'Predicted {target_column}', fontsize = axis_fs)#ylabel
ax.set_title('Residuals', fontsize = title_fs)
ax.set_xlabel(f'True {target_column}', fontsize=axis_fs)
ax.set_ylabel(f'Predicted {target_column}', fontsize=axis_fs) # ylabel
ax.set_title('Residuals', fontsize=title_fs)
# Square aspect ratio
ax.plot([-100, 100], [-100, 100], 'black', linewidth=1)
plt.tight_layout()
RESIDUAL_FILE = "residuals.png"
plt.savefig(output_base / METRICS_FOLDER / RESIDUAL_FILE, dpi=120)
plt.savefig(output_base / METRICS_FOLDER / RESIDUAL_FILE, dpi=120)
# TODO: for cml, we might want to have class that outputs all data and plots to add to the report
# If we want residual plot/ any plots, we will need to self host
# plt.savefig(RESIDUAL_FILE, dpi=120)
# TODO: introduce a seperate script for model optimisation, and from there, optimise for deployment
# Imagining for now that the model trained here is the best model amongst all models built
logger.info("--- Optimising model for deployment ---")
deployment_model_path = model.optimise_model_for_deployment(deployment_path= output_base / DEPLOYMENT_FOLDER)
deployment_model_path = model.optimise_model_for_deployment(deployment_path=output_base / DEPLOYMENT_FOLDER)
logger.info(f"Optimised version of best model can be found at: {deployment_model_path}")
# TODO: Need a model registry - for now have this as a CSV
@ -170,43 +172,49 @@ def training(
registry_df = pd.read_csv(registry_path, index_col=None)
else:
# TODO: Moved columns into settings: MODEL_DETAILS and Metrics class columns
registry_df = pd.DataFrame(columns=['model_type', 'model_name', 'model_location', 'mean_absolute_error', 'root_mean_squared_error', 'mean_squared_error', 'r2', 'pearsonr', 'median_absolute_error', 'mape', 'best_model'])
registry_df = pd.DataFrame(
columns=['model_type', 'model_name', 'model_location', 'mean_absolute_error', 'root_mean_squared_error',
'mean_squared_error', 'r2', 'pearsonr', 'median_absolute_error', 'mape', 'best_model'])
model_details_df = pd.DataFrame(
[{
'model_type': model_type,
'model_name': model_root,
'model_type': model_type,
'model_name': model_root,
'model_location': deployment_model_path
}]
)
)
registry_row = pd.concat([model_details_df, metrics_df], axis=1)
registry_df = pd.concat([registry_df, registry_row], axis=0).reset_index(drop=True)
# TODO: will need a rebuild script metric script -i.e. if we add new metrics, we will want to load models and regenerate new metrics
# TODO: will need a rebuild script metric script -i.e. if we add new metrics, we will want to load models and
# regenerate new metrics
# TODO: decide metric to optimise to
registry_df = registry_df.sort_values("mean_absolute_error", ascending=False).reset_index(drop=True)
registry_df['best_model'] = [False]*len(registry_df)
registry_df['best_model'] = [False] * len(registry_df)
registry_df.loc[0, 'best_model'] = True
logger.info("--- Saving new model to registry ---")
# Ensure the directory exists
registry_path.parent.mkdir(parents=True, exist_ok=True)
registry_df.to_csv(registry_path, index=False)
logger.info("--- Training Pipeline Complete --- ")
if __name__ == "__main__":
logger.info('---Begin Pipeline---')
logger.info('---Ingest Arguments---')
args = ingest_arguments()
# To run script: python3 training.py --train-filepath ./model_build_data/change_data/rdsap_full/train_validation_data.parquet --test-filepath ./model_build_data/change_data/rdsap_full/test_data.parquet
# To run script: python3 training.py --train-filepath
# ./model_build_data/change_data/rdsap_full/train_validation_data.parquet --test-filepath
# ./model_build_data/change_data/rdsap_full/test_data.parquet
# TODO: Ingest hyper parameters from somewhere - currently change at the top of script
training(
train_filepath=args.train_filepath,
test_filepath=args.test_filepath,
target_column=args.target_column,
train_filepath=args.train_filepath,
test_filepath=args.test_filepath,
target_column=args.target_column,
model_type=args.model_type
)
)